Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 1.9e-33 145.2 69 100.0
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 4.2e-17 90.9 46 87.0
Lsat_1_v5_gn_2_106661 Lactuca sativa HOM05D001415 ORTHO05D001075 1.0e-15 86.3 64 68.8
Lsat_1_v5_gn_6_25220 Lactuca sativa HOM05D001415 ORTHO05D001075 6.9e-12 73.6 70 60.0
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 6.9e-12 73.6 52 65.4
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 9.9e-11 69.7 42 73.8
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 9.9e-11 69.7 52 63.5
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-10 69.3 42 73.8
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 1.3e-10 69.3 42 73.8
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.7e-10 68.9 41 73.2
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 1.7e-10 68.9 41 73.2
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 2.2e-10 68.6 38 76.3
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 2.2e-10 68.6 42 69.0
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 2.9e-10 68.2 42 71.4
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 2.9e-10 68.2 34 79.4
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 2.9e-10 68.2 56 53.6
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-10 68.2 43 67.4
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 3.8e-10 67.8 37 81.1
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 3.8e-10 67.8 35 74.3
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.8e-10 67.8 61 60.7
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.8e-10 67.8 61 60.7
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 3.8e-10 67.8 53 58.5
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 4.9e-10 67.4 42 71.4
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 4.9e-10 67.4 33 81.8
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 4.9e-10 67.4 33 81.8
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 4.9e-10 67.4 33 81.8
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 4.9e-10 67.4 42 71.4
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 4.9e-10 67.4 42 71.4
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 4.9e-10 67.4 42 71.4
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 4.9e-10 67.4 38 76.3
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 6.4e-10 67.0 38 76.3
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 6.4e-10 67.0 37 78.4
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 6.4e-10 67.0 37 78.4
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 6.4e-10 67.0 37 78.4
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 6.4e-10 67.0 37 78.4
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 6.4e-10 67.0 37 78.4
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-09 66.2 49 59.2
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.1e-09 66.2 47 57.4
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 1.4e-09 65.9 42 69.0
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 1.4e-09 65.9 33 78.8
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 1.4e-09 65.9 34 79.4
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 1.4e-09 65.9 35 80.0
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 1.9e-09 65.5 40 70.0
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 1.9e-09 65.5 40 70.0
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 2.4e-09 65.1 58 51.7
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 3.2e-09 64.7 34 73.5
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.2e-09 64.7 61 59.0
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.2e-09 64.3 53 58.5
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.2e-09 64.3 53 58.5
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 5.4e-09 63.9 41 65.9
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 5.4e-09 63.9 38 71.1
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 7.1e-09 63.5 49 55.1
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 7.1e-09 63.5 66 48.5
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 7.1e-09 63.5 64 50.0
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 7.1e-09 63.5 34 73.5
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 9.3e-09 63.2 58 51.7
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.3e-09 63.2 40 65.0
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 9.3e-09 63.2 55 50.9
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 9.3e-09 63.2 65 50.8
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-08 62.8 33 78.8
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 1.2e-08 62.8 41 61.0
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-08 62.4 53 56.6
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 2.1e-08 62.0 50 60.0
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 2.7e-08 61.6 49 61.2
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.7e-08 61.6 34 79.4
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 2.7e-08 61.6 40 62.5
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 4.6e-08 60.8 38 65.8
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 6.0e-08 60.5 64 46.9
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 6.0e-08 60.5 40 60.0
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 7.9e-08 60.1 55 45.5
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 7.9e-08 60.1 40 60.0
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 1.0e-07 59.7 46 60.9
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 1.0e-07 59.7 46 60.9
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 1.0e-07 59.7 46 60.9
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.0e-07 59.7 37 73.0
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.0e-07 59.7 37 73.0
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.0e-07 59.7 37 73.0
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 1.0e-07 59.7 40 62.5
HPP92_018137 Vanilla planifolia HOM05D001415 ORTHO05D001075 1.0e-07 59.7 70 41.4
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.3e-07 59.3 49 57.1
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.3e-07 59.3 50 58.0
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.3e-07 59.3 40 57.5
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 1.3e-07 59.3 41 56.1
Ah.08g211680 Amaranthus hybridus HOM05D001415 ORTHO05D001075 1.8e-07 58.9 32 68.8
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-07 58.9 46 60.9
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 1.8e-07 58.9 46 60.9
Carub.0005s1977 Capsella rubella HOM05D001415 ORTHO05D001075 1.8e-07 58.9 35 71.4
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 1.8e-07 58.9 58 44.8
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 2.3e-07 58.5 46 58.7
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 2.3e-07 58.5 46 58.7
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 3.0e-07 58.2 33 66.7
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.0e-07 58.2 40 57.5
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.0e-07 58.2 40 57.5
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.0e-07 58.2 40 57.5
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 3.0e-07 58.2 40 55.0
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 3.0e-07 58.2 40 57.5
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 3.0e-07 58.2 33 60.6
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 3.9e-07 57.8 54 48.1
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 57.8 40 57.5
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.9e-07 57.8 40 57.5
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.9e-07 57.8 40 57.5
AT3G53232 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 5.1e-07 57.4 49 53.1
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 6.7e-07 57.0 40 55.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 6.7e-07 57.0 56 46.4
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.7e-07 57.0 47 55.3
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 8.7e-07 56.6 53 49.1
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 8.7e-07 56.6 38 55.3
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 8.7e-07 56.6 41 58.5
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 8.7e-07 56.6 52 48.1
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 1.1e-06 56.2 48 52.1
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 1.1e-06 56.2 35 62.9
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 1.5e-06 55.8 46 56.5
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 1.5e-06 55.8 46 56.5
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 1.5e-06 55.8 46 56.5
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 1.5e-06 55.8 46 56.5
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 1.5e-06 55.8 46 56.5
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 1.5e-06 55.8 53 45.3
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 1.5e-06 55.8 46 56.5
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 1.5e-06 55.8 33 63.6
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 1.9e-06 55.5 32 65.6
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 1.9e-06 55.5 64 46.9
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 2.5e-06 55.1 32 62.5
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 2.5e-06 55.1 32 65.6
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 2.5e-06 55.1 33 63.6
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 2.5e-06 55.1 64 42.2
Zm00001eb367930 Zea mays HOM05D001415 ORTHO05D001075 2.5e-06 55.1 34 55.9
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 3.3e-06 54.7 53 45.3
CsaV3_6G039840 Cucumis sativus L. HOM05D001415 ORTHO05D001075 3.3e-06 54.7 68 39.7
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 3.3e-06 54.7 62 45.2
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 3.3e-06 54.7 38 55.3
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 3.3e-06 54.7 32 62.5
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 3.3e-06 54.7 50 50.0
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 3.3e-06 54.7 50 50.0
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 3.3e-06 54.7 32 62.5
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 3.3e-06 54.7 32 65.6
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 3.3e-06 54.7 33 57.6
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 4.3e-06 54.3 53 45.3
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 4.3e-06 54.3 53 45.3
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 4.3e-06 54.3 31 61.3
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 4.3e-06 54.3 64 40.6
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 4.3e-06 54.3 38 57.9
Phvul.007G235700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 4.3e-06 54.3 33 60.6
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 4.3e-06 54.3 32 65.6
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 4.3e-06 54.3 61 37.7
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 5.6e-06 53.9 32 65.6
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 5.6e-06 53.9 53 43.4
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 5.6e-06 53.9 53 43.4
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.6e-06 53.9 40 55.0
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.6e-06 53.9 31 64.5
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.6e-06 53.9 30 66.7
Glyma.10G122700 Glycine max HOM05D001415 ORTHO05D001075 5.6e-06 53.9 33 60.6
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 5.6e-06 53.9 30 66.7
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 5.6e-06 53.9 40 50.0
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 5.6e-06 53.9 35 51.4
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 7.4e-06 53.5 66 40.9
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 7.4e-06 53.5 31 64.5
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 7.4e-06 53.5 55 43.6
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 7.4e-06 53.5 31 61.3
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 7.4e-06 53.5 64 40.6
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 7.4e-06 53.5 32 62.5
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 7.4e-06 53.5 60 43.3
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 7.4e-06 53.5 31 61.3
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 7.4e-06 53.5 31 61.3
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 7.4e-06 53.5 32 59.4
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 7.4e-06 53.5 58 44.8
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 7.4e-06 53.5 31 61.3
HPP92_001492 Vanilla planifolia HOM05D001415 ORTHO05D001075 7.4e-06 53.5 59 37.3
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 9.6e-06 53.1 32 59.4
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 9.6e-06 53.1 64 40.6
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 9.6e-06 53.1 32 59.4
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 9.6e-06 53.1 31 64.5
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 9.6e-06 53.1 60 41.7
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 9.6e-06 53.1 31 64.5
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 9.6e-06 53.1 29 72.4
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 9.6e-06 53.1 29 72.4
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 9.6e-06 53.1 55 45.5
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 9.6e-06 53.1 32 62.5
Sc12g0001300 Simmondsia chinensis HOM05D001415 ORTHO05D001075 9.6e-06 53.1 31 64.5
THA.LOC104810035 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 9.6e-06 53.1 57 42.1


User provided reference genes

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