Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 0.0e+00 1100.1 533 100.0
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.4e-261 906.0 530 84.9
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.5e-226 787.7 522 76.8
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 2.0e-188 662.9 519 65.1
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 7.3e-170 601.3 521 61.2
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 1.8e-160 570.1 318 87.7
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 2.3e-147 526.6 516 52.9
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 6.2e-145 518.5 532 51.7
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.2e-143 514.2 520 52.3
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 2.6e-143 513.1 516 54.3
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 1.4e-141 507.3 517 52.8
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.6e-140 503.8 515 51.7
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 3.0e-139 499.6 519 51.8
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 6.7e-139 498.4 518 51.5
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 3.3e-138 496.1 517 51.3
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 3.3e-138 496.1 530 51.1
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 7.4e-138 495.0 517 51.8
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 9.6e-138 494.6 523 49.5
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 1.6e-137 493.8 529 50.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.7e-137 492.7 505 52.3
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.4e-136 490.0 501 52.3
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 3.1e-136 489.6 513 49.3
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 4.0e-136 489.2 517 54.0
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 5.3e-136 488.8 516 48.8
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 6.9e-136 488.4 507 50.5
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.3e-134 484.2 522 51.0
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.9e-133 480.3 523 48.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 3.2e-133 479.6 518 50.4
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 5.5e-133 478.8 523 47.8
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 5.5e-133 478.8 520 49.6
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 7.1e-133 478.4 543 49.0
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.6e-132 477.2 518 50.0
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 2.1e-132 476.9 517 50.9
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 6.1e-132 475.3 521 50.5
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.1e-130 471.1 515 49.9
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 1.9e-130 470.3 523 48.8
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 4.3e-130 469.2 525 47.4
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 3.7e-129 466.1 522 48.5
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 1.4e-128 464.2 518 49.2
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.2e-126 456.8 518 47.3
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 3.8e-126 456.1 515 47.4
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.1e-125 454.5 529 48.8
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.4e-125 454.1 515 47.4
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 4.2e-125 452.6 514 47.9
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 4.6e-124 449.1 522 46.4
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 1.0e-123 448.0 523 47.4
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 6.7e-123 445.3 411 55.2
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.1e-122 444.5 488 50.2
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 4.3e-122 442.6 558 44.8
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 5.7e-122 442.2 525 47.4
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 4.1e-120 436.0 522 45.2
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 2.6e-119 433.3 423 54.8
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.5e-119 432.6 581 42.2
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 6.5e-118 428.7 410 56.3
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 9.4e-117 424.9 520 43.8
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 7.9e-116 421.8 535 45.0
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 2.3e-115 420.2 522 43.9
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 1.1e-112 411.4 522 44.3
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 5.9e-111 405.6 523 43.6
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 1.3e-110 404.4 576 41.7
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 6.5e-110 402.1 631 40.4
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 4.2e-109 399.4 522 45.4
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 5.5e-109 399.1 518 43.2
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 5.5e-109 399.1 522 44.1
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 9.4e-109 398.3 521 44.1
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.7e-108 396.0 500 45.8
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 8.0e-108 395.2 520 42.5
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.0e-107 394.8 558 42.1
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.3e-107 393.7 523 43.8
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 3.9e-107 392.9 516 42.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.5e-106 391.0 520 42.5
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 3.3e-106 389.8 519 42.2
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.4e-104 383.6 530 44.3
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.4e-104 383.6 519 43.5
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 9.1e-104 381.7 532 41.5
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 2.2e-102 377.1 562 40.7
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 5.5e-101 372.5 568 40.3
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 4.0e-99 366.3 338 55.6
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 2.0e-98 364.0 428 48.1
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 5.7e-98 362.5 457 46.0
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 1.7e-97 360.9 529 39.9
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.8e-97 360.1 363 50.4
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 6.3e-97 359.0 436 45.2
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.4e-96 357.8 317 56.8
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 1.7e-94 350.9 509 39.7
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.9e-93 347.4 509 41.7
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 2.7e-92 343.6 518 40.9
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 7.5e-90 335.5 512 39.8
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 9.8e-90 335.1 259 63.3
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 2.7e-87 327.0 518 38.0
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.0e-75 288.5 290 51.0
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.1e-72 278.5 335 47.8
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 2.4e-72 277.3 339 47.2
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 5.0e-70 269.6 507 33.3
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 3.6e-68 263.5 330 46.7
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 1.3e-65 255.0 376 39.1
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 4.1e-64 250.0 348 45.1
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 2.7e-63 247.3 205 59.0
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 3.0e-62 243.8 425 34.8
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 9.6e-53 212.2 215 52.1
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 8.1e-52 209.1 157 61.1
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 9.9e-50 202.2 169 58.6
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.9e-48 198.0 192 55.7
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 3.6e-44 183.7 413 31.7
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 2.2e-41 174.5 209 46.4
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 6.4e-41 172.9 234 44.4
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 1.4e-40 171.8 260 41.2
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.8e-30 138.3 130 53.8
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 3.9e-30 137.1 211 42.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-28 131.7 373 29.2
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 9.3e-24 115.9 83 67.5
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 9.6e-21 105.9 130 43.8
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.6e-18 97.8 53 84.9
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 2.6e-18 97.8 124 43.5
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 1.3e-14 85.5 155 35.5
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 3.3e-13 80.9 276 26.4
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.4e-06 58.9 53 50.9
PRCOL_00007275 Prasinoderma coloniale HOM05D006389 ORTHO05D007863 1.8e-06 58.5 174 27.6
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.3e-06 58.2 53 45.3
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 6.7e-06 56.6 86 40.7


User provided reference genes

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