Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 0.0e+00 1545.8 816 100.0
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.2e-294 1015.0 820 72.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.7e-269 931.4 884 63.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 9.9e-251 870.5 851 62.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.5e-187 659.4 927 49.8
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.5e-182 641.7 929 47.9
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-181 641.0 929 48.0
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.8e-181 639.8 883 48.6
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.0e-174 617.1 924 47.9
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.8e-172 610.5 928 46.7
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 4.5e-171 605.9 918 46.8
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.4e-167 594.3 944 46.1
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 9.8e-166 588.2 891 46.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.4e-165 585.5 904 45.8
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.6e-163 580.9 886 46.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.7e-163 580.1 910 48.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.5e-163 579.7 929 46.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.3e-162 577.8 916 46.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.7e-162 577.4 923 45.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 3.0e-162 576.6 958 45.1
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 5.6e-161 572.4 936 45.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 6.2e-160 568.9 916 46.2
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 8.0e-160 568.5 872 45.0
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 4.0e-159 566.2 926 44.1
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 2.0e-158 563.9 910 45.5
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.4e-158 562.8 900 45.7
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 5.8e-158 562.4 858 46.9
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 2.2e-157 560.5 931 44.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 5.4e-156 555.8 896 45.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.6e-155 554.3 924 44.0
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.7e-155 553.5 925 44.3
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 4.6e-155 552.7 917 44.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.0e-155 552.4 921 43.9
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.3e-154 550.4 921 43.9
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.0e-154 550.1 929 44.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 3.9e-154 549.7 899 44.3
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.0e-154 549.3 919 43.9
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 5.6e-153 545.8 950 44.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.6e-153 545.8 934 45.5
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.3e-153 545.4 917 44.5
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.5e-153 545.0 929 42.7
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 9.5e-153 545.0 884 45.6
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.2e-152 544.7 909 44.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.6e-152 544.3 849 45.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.7e-152 542.7 804 45.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 4.7e-152 542.7 929 43.4
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 6.2e-152 542.3 919 42.9
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.1e-152 542.0 930 42.8
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-151 540.8 930 42.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 5.2e-151 539.3 919 43.3
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 5.2e-151 539.3 823 45.1
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 8.9e-151 538.5 885 43.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-150 537.3 746 49.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.4e-150 536.6 921 43.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.8e-150 535.8 922 43.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 2.9e-149 533.5 827 45.0
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 8.3e-149 531.9 861 44.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.1e-148 531.6 916 43.2
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.4e-148 531.2 915 43.1
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.4e-148 530.4 869 44.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.2e-147 528.1 903 43.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.7e-147 526.9 911 43.8
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 6.0e-147 525.8 870 45.1
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 6.0e-147 525.8 897 44.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.1e-146 522.7 933 43.1
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 8.6e-146 521.9 879 43.5
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.5e-145 521.2 826 43.2
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 7.3e-145 518.8 902 43.5
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.1e-144 515.4 829 42.6
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-143 514.6 824 46.0
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-143 514.2 828 42.6
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.1e-143 513.5 931 42.0
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 7.6e-142 508.8 894 44.3
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 9.9e-142 508.4 902 43.9
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.3e-141 508.1 878 44.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 6.4e-141 505.8 917 42.0
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.2e-140 503.4 917 42.6
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.2e-139 501.5 933 41.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.5e-139 500.0 920 42.6
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 7.8e-139 498.8 928 41.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.3e-138 497.3 871 43.3
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.0e-138 496.9 897 41.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-137 494.6 889 42.4
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-136 491.5 915 42.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.1e-135 488.4 800 43.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-135 487.6 860 42.2
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 4.0e-135 486.5 684 50.4
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.9e-135 485.7 911 41.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.6e-134 483.8 939 40.1
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.4e-132 478.0 880 41.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.9e-132 477.6 866 43.4
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.2e-131 474.9 914 41.9
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-131 474.2 936 40.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.7e-131 473.8 938 40.2
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-130 470.3 934 40.1
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.5e-129 468.0 928 42.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.9e-129 467.6 802 45.5
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.8e-128 463.8 901 41.4
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.4e-127 461.5 898 41.3
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.7e-125 454.5 905 41.9
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 3.8e-125 453.4 875 41.0
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.9e-124 451.1 859 42.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.4e-124 450.7 913 40.3
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 7.1e-124 449.1 892 40.5
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.1e-123 447.6 837 41.6
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 6.0e-123 446.0 897 39.4
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.8e-122 444.5 888 39.9
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.0e-122 443.7 860 41.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.3e-120 438.3 984 37.6
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.1e-119 435.3 841 40.0
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.1e-119 435.3 840 41.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-119 435.3 872 39.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.4e-119 434.9 671 46.2
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 6.9e-119 432.6 842 40.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 9.9e-118 428.7 695 43.5
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.9e-117 427.2 833 40.2
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.9e-117 427.2 833 40.2
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 5.5e-116 422.9 883 38.8
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 7.1e-116 422.5 834 40.4
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.1e-115 421.0 834 40.5
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.9e-114 416.8 790 41.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-114 416.4 899 39.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 8.7e-114 415.6 841 38.9
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.1e-113 415.2 833 38.5
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.5e-113 414.1 667 46.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.3e-113 413.7 847 38.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 7.4e-113 412.5 842 38.1
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.1e-111 408.7 845 38.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.4e-111 408.3 821 38.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 5.3e-111 406.4 847 38.5
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.5e-108 396.4 883 40.8
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 6.0e-107 392.9 450 52.0
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 5.7e-105 386.3 769 39.5
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 8.5e-101 372.5 772 39.2
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.7e-99 367.5 594 45.3
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 6.3e-96 356.3 684 44.2
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.4e-92 342.4 819 35.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 9.4e-92 342.4 858 35.9
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.6e-91 340.5 675 42.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.4e-81 306.2 615 39.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.2e-80 304.7 827 36.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.6e-78 298.5 847 34.5
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.3e-77 295.4 798 33.2
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.9e-77 294.3 755 34.3
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.1e-75 288.1 509 42.4
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.0e-75 286.2 801 33.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.8e-72 277.7 506 40.3
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 3.5e-70 270.8 883 32.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.2e-69 268.1 782 32.6
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.0e-69 266.9 496 43.5
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.5e-57 228.8 699 32.2
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.4e-55 220.3 324 43.5
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.4e-55 220.3 407 43.7
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 7.0e-55 219.9 358 43.6
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.2e-47 194.5 345 44.1
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.2e-46 192.6 224 51.3
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 2.7e-46 191.4 412 39.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.0e-45 188.0 270 44.4
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.3e-42 178.3 839 28.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 5.2e-42 177.2 360 40.0
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.9e-39 168.7 438 32.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.6e-38 164.1 545 31.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.0e-30 137.1 130 56.2
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.1e-28 132.9 250 38.0
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-28 132.1 167 49.7
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.5e-28 131.7 272 44.1
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.4e-26 125.2 165 44.2
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-24 119.0 240 40.0
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.3e-21 108.6 104 55.8
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 3.9e-21 107.8 104 53.8
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.8e-16 91.3 132 42.4
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.4e-15 89.4 105 50.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.5e-12 79.3 125 44.8
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.5e-12 78.6 111 44.1
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.1e-10 71.6 118 43.2
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.1e-10 71.6 42 78.6
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.9e-10 70.5 121 39.7
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.0e-09 68.9 125 40.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.7e-08 65.9 132 33.3
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-07 62.4 89 55.1
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.9e-07 62.4 117 34.2


User provided reference genes

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