Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 2348.2 1103 100.0
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 2010.7 1093 84.7
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 2006.5 1087 85.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1784.2 1105 74.2
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1740.3 1116 71.7
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1711.4 1111 70.2
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1711.0 1112 70.0
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1709.1 1112 70.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1703.7 1109 69.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1701.4 1093 70.5
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1701.4 1063 73.8
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1698.7 1103 70.6
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1693.3 1111 69.4
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1692.9 1101 69.8
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1689.1 1100 70.5
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1688.7 1101 69.6
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1688.7 1105 69.7
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1096 69.7
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1682.5 1103 69.3
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1679.1 1077 72.0
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1672.1 1117 68.5
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1671.0 1110 69.2
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1669.8 1102 69.1
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1668.3 1105 68.7
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1666.0 1098 69.6
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1125 67.9
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1655.6 1110 68.4
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1648.6 1100 68.3
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1644.4 1103 67.8
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1644.0 1106 67.8
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1643.2 1109 67.7
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1117 67.9
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1638.6 1048 71.5
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1638.2 1105 67.8
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1637.1 1117 67.3
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1637.1 1107 68.1
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1636.3 1110 67.4
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1636.3 1105 67.9
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1634.0 1108 68.0
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1633.6 1119 67.4
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1632.5 1116 67.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1630.9 1099 67.7
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1629.8 1103 66.6
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1629.4 1101 67.2
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1627.1 1094 68.0
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1627.1 1099 68.0
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1626.7 1108 67.2
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1624.0 1089 67.8
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1623.6 1096 68.0
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1622.4 1118 66.9
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1622.1 1098 67.7
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1620.5 1102 67.1
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1620.1 1108 66.7
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1619.0 1109 67.2
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1616.7 1103 67.2
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1616.3 1102 66.8
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1613.6 1100 66.6
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1612.8 1104 67.3
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1612.8 1111 66.1
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1611.7 1102 66.6
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1607.0 1094 67.7
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1095 67.2
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1598.6 1111 66.8
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1595.9 1102 66.2
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1594.3 1092 67.1
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1592.4 1100 66.4
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1592.4 1107 65.9
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1590.9 1214 61.6
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1590.1 1111 65.3
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1585.1 1061 68.1
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1584.3 1108 66.1
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1584.3 1093 66.8
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1584.3 1101 66.8
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1580.1 1095 66.5
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1578.9 1108 65.7
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1573.9 1118 65.2
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1568.9 1092 65.8
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1567.7 1095 66.8
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1562.4 1121 63.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1551.2 1108 64.7
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1547.3 1112 62.9
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1542.3 1149 64.7
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1536.5 1130 63.9
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1521.5 987 70.5
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1481.1 1075 64.0
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1475.3 985 69.3
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1362.8 899 69.9
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1349.7 922 66.7
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1324.3 1122 55.1
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1300.4 1120 54.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1268.4 1106 53.3
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1239.6 1031 57.6
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1217.2 749 74.6
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1215.3 829 68.0
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1183.7 829 66.5
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1167.1 1126 51.2
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1161.4 753 69.6
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1140.2 738 69.9
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 5.3e-311 1071.2 665 72.5
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.8e-308 1062.8 1128 48.0
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 3.0e-274 949.1 687 63.9
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.8e-255 886.7 691 60.9
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 6.7e-242 841.6 498 77.3
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 7.4e-217 758.4 515 67.0
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.8e-215 753.8 515 67.0
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.7e-200 703.0 568 57.6
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 2.0e-161 574.3 1494 29.3
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 3.4e-153 547.0 601 46.8
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 2.1e-147 527.7 380 65.3
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 4.0e-130 470.3 284 73.2
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.1e-115 421.4 240 76.7
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 1.0e-112 412.5 587 39.9
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.7e-110 404.4 268 73.1
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 4.2e-87 327.4 193 74.6
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 4.7e-86 323.9 174 84.5
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.0e-81 308.5 258 55.4
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.7e-78 298.1 208 65.9
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.8e-74 285.4 208 63.5
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 7.7e-73 280.0 823 27.3
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.6e-68 265.0 156 72.4
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 1.4e-58 232.6 179 57.5
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.1e-50 206.5 208 48.1
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 1.4e-50 206.1 164 61.6
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.1e-47 196.4 116 74.1
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 4.9e-43 181.0 198 47.0
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 8.3e-43 180.3 133 68.4
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 2.7e-41 175.3 174 51.1
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 1.2e-38 166.4 118 62.7
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 8.1e-38 163.7 109 74.3
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.7e-35 156.0 144 52.1
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 3.7e-35 154.8 98 73.5
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.7e-35 154.8 134 54.5
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.1e-34 153.3 135 54.1
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.1e-33 149.1 138 49.3
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.7e-32 146.0 105 57.1
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 7.3e-31 140.6 89 68.5
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 4.0e-29 134.8 129 55.8
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 8.4e-27 127.1 75 72.0
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 5.4e-26 124.4 66 77.3
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 2.3e-24 119.0 164 40.9
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.3e-23 115.2 53 90.6
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 6.9e-21 107.5 101 50.5
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 7.6e-20 104.0 104 48.1
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 3.8e-19 101.7 84 54.8
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 5.4e-18 97.8 128 43.0
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 7.1e-18 97.4 45 84.4
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.7e-17 95.5 100 48.0
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 4.6e-17 94.7 45 84.4
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 3.9e-16 91.7 45 80.0
Cfa026367 Carpinus fangiana HOM05D005112 ORTHO05D123685 2.1e-14 85.9 375 25.1
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 2.6e-12 79.0 96 41.7
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 7.1e-10 70.9 45 64.4
Lsat_1_v5_gn_1_71901 Lactuca sativa HOM05D017333 ORTHO05D017063 1.6e-09 69.7 48 66.7
Lsat_1_v5_gn_1_88920 Lactuca sativa HOM05D000207 ORTHO05D001482 1.6e-09 69.7 43 72.1
Lsat_1_v5_gn_2_15720 Lactuca sativa HOM05D001670 ORTHO05D016190 2.7e-09 68.9 44 68.2
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 3.5e-09 68.6 44 68.2
Lsat_1_v5_gn_5_41360 Lactuca sativa HOM05D000207 ORTHO05D016190 3.5e-09 68.6 38 76.3
Lsat_1_v5_gn_1_91120 Lactuca sativa HOM05D002740 ORTHO05D003126 1.0e-08 67.0 35 80.0
Lsat_1_v5_gn_8_57801 Lactuca sativa HOM05D002290 ORTHO05D017063 1.0e-08 67.0 35 80.0
Lsat_1_v5_gn_4_164861 Lactuca sativa HOM05D001159 ORTHO05D001712 1.3e-08 66.6 35 77.1
Lsat_1_v5_gn_8_34420 Lactuca sativa HOM05D000274 ORTHO05D001466 1.3e-08 66.6 37 75.7
Lsat_1_v5_gn_5_54380 Lactuca sativa HOM05D000274 ORTHO05D001466 2.3e-08 65.9 37 75.7
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 2.3e-08 65.9 60 53.3
Lsat_1_v5_gn_9_113201 Lactuca sativa HOM05D000207 ORTHO05D024759 5.1e-08 64.7 36 77.8
Lsat_1_v5_gn_3_87560 Lactuca sativa HOM05D000274 ORTHO05D001466 8.7e-08 63.9 39 71.8
Lsat_1_v5_gn_2_136400 Lactuca sativa HOM05D001315 ORTHO05D004199 1.9e-07 62.8 34 76.5
Lsat_1_v5_gn_5_181001 Lactuca sativa HOM05D005112 ORTHO05D006681 9.6e-07 60.5 90 37.8


User provided reference genes

Program Settings