Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.8e-177 624.4 318 100.0
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 4.6e-119 431.8 239 87.9
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 4.0e-115 418.7 299 75.9
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.5e-114 416.8 255 80.4
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.2e-108 397.1 231 84.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 7.8e-103 377.9 258 72.9
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.3e-101 371.3 321 64.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 7.3e-101 371.3 257 71.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.6e-100 369.0 319 62.7
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.2e-100 368.2 256 71.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.6e-98 362.8 282 66.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.6e-98 362.8 232 76.3
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.8e-98 361.7 232 74.1
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 7.6e-98 361.3 314 60.8
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 9.9e-98 360.9 232 73.7
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.7e-97 360.1 251 69.3
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.2e-97 359.8 315 60.6
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.1e-96 357.5 252 70.2
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.4e-96 356.3 300 63.7
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 4.2e-96 355.5 309 62.5
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 9.3e-96 354.4 236 72.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.1e-95 353.2 252 69.0
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 7.9e-95 351.3 307 61.2
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 7.9e-95 351.3 306 60.8
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.0e-94 350.9 305 61.3
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 1.8e-94 350.1 321 59.5
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.8e-94 350.1 305 61.6
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.3e-94 349.7 311 60.1
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.0e-94 349.4 249 70.3
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.9e-94 349.0 316 60.8
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 5.1e-94 348.6 229 72.9
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 8.7e-94 347.8 328 57.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.1e-93 347.4 300 61.3
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.5e-93 347.1 318 59.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.9e-93 346.7 274 65.0
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.5e-93 346.3 242 69.0
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 3.3e-93 345.9 245 68.6
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 3.3e-93 345.9 319 59.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 4.3e-93 345.5 220 74.5
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 5.6e-93 345.1 233 70.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 5.6e-93 345.1 233 70.4
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 7.4e-93 344.7 242 68.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.4e-93 344.7 306 63.1
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 7.4e-93 344.7 308 60.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 9.6e-93 344.4 247 70.4
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.6e-92 343.6 313 59.7
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.1e-92 343.2 302 59.6
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-92 342.8 238 70.2
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.8e-92 342.8 300 61.7
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.8e-92 342.8 314 60.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.8e-92 342.8 263 65.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.8e-92 342.0 308 60.1
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.8e-92 342.0 324 58.6
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 6.2e-92 341.7 310 59.0
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 6.2e-92 341.7 241 68.5
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-91 340.5 288 61.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.4e-91 340.5 319 58.0
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.4e-91 339.7 271 64.6
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.1e-91 339.3 306 58.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.1e-91 339.3 314 57.3
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 5.3e-91 338.6 313 59.1
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 6.9e-91 338.2 303 60.1
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 9.0e-91 337.8 318 58.5
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 2.0e-90 336.7 245 68.6
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.4e-90 335.9 232 69.4
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 7.6e-90 334.7 285 61.1
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 9.9e-90 334.3 267 64.4
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 9.9e-90 334.3 281 60.1
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.3e-89 334.0 303 58.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 2.9e-89 332.8 294 59.9
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 3.8e-89 332.4 256 66.0
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.4e-88 330.5 276 61.2
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.9e-88 330.1 321 56.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 2.4e-88 329.7 280 61.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.4e-88 329.7 294 58.2
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.2e-88 329.3 261 64.8
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.2e-88 328.9 255 65.1
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 5.5e-88 328.6 229 68.6
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 5.5e-88 328.6 232 65.9
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 7.1e-88 328.2 307 58.6
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 9.3e-88 327.8 237 70.0
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 9.3e-88 327.8 271 63.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 2.1e-87 326.6 263 62.4
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.5e-87 325.9 303 60.4
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.5e-87 325.9 253 61.7
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 4.6e-87 325.5 275 60.7
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 6.0e-87 325.1 237 69.6
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 6.0e-87 325.1 294 57.5
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-86 323.9 271 63.8
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.3e-86 323.9 231 67.5
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.0e-86 322.8 364 53.3
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 3.0e-86 322.8 202 77.2
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 5.1e-86 322.0 277 56.7
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 6.7e-86 321.6 299 58.2
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.9e-85 320.1 292 60.6
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.9e-85 320.1 240 65.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.9e-85 320.1 333 55.6
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 5.6e-85 318.5 279 59.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.7e-84 315.8 269 60.2
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 6.2e-84 315.1 277 58.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 8.2e-84 314.7 274 58.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.8e-83 313.5 367 51.5
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 6.9e-83 311.6 231 63.6
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.0e-83 311.2 217 68.7
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.6e-82 309.7 310 56.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.4e-82 309.3 294 56.8
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 4.5e-82 308.9 277 59.2
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 4.5e-82 308.9 277 59.2
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 7.6e-82 308.1 296 57.8
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.6e-82 308.1 227 63.4
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.4e-80 303.9 272 59.9
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 3.2e-80 302.8 191 76.4
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 4.2e-80 302.4 201 70.1
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.7e-79 299.7 264 59.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.6e-79 298.9 221 65.2
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.8e-78 297.0 261 59.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.1e-78 295.4 280 56.8
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 8.7e-78 294.7 261 58.6
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-77 294.3 249 61.0
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.5e-77 293.9 230 64.3
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 9.7e-77 291.2 218 64.2
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 3.7e-76 289.3 223 63.7
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.6e-71 273.9 187 72.7
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.7e-68 263.8 218 65.6
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 4.8e-68 262.3 203 67.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.2e-64 249.6 225 53.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 7.9e-63 245.0 230 53.5
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.8e-60 236.5 225 52.9
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-59 234.2 232 53.9
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.9e-56 223.8 159 67.3
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 2.5e-56 223.4 309 48.9
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.5e-53 214.2 188 61.7
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.5e-50 202.6 157 65.6
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.0e-49 201.4 227 52.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.2e-46 189.1 124 72.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 4.4e-45 186.0 150 58.0
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 1.6e-42 177.6 230 42.2
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 7.7e-42 175.3 121 71.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 2.1e-39 167.2 302 38.7
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.1e-39 167.2 231 40.3
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-38 164.9 283 38.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 3.0e-38 163.3 128 67.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 2.6e-37 160.2 121 66.9
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.0e-34 150.6 227 39.2
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.0e-33 148.3 101 69.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-33 147.9 164 51.2
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.5e-32 143.7 107 68.2
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 3.1e-27 126.7 81 67.9
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 7.0e-27 125.6 103 63.1
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.0e-25 121.7 96 59.4
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 5.0e-25 119.4 209 35.4
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 3.3e-24 116.7 184 39.1
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 2.9e-20 103.6 62 72.6
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 4.9e-20 102.8 95 52.6
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 4.9e-20 102.8 92 57.6
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.4e-19 100.5 74 62.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 9.2e-19 98.6 104 52.9
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.2e-19 98.6 104 52.9
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 9.2e-19 98.6 74 56.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 3.5e-18 96.7 237 31.2
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.5e-18 96.7 81 59.3
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 3.7e-12 76.6 48 77.1
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 7.0e-11 72.4 53 60.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.5e-08 63.9 63 50.8
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 6.2e-07 59.3 63 52.4
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 8.1e-07 58.9 43 65.1


User provided reference genes

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