Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 0.0e+00 1092.4 572 100.0
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.3e-196 690.3 586 66.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.4e-195 686.8 545 68.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.9e-163 580.1 575 60.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.3e-143 514.2 548 53.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.7e-140 503.8 593 52.4
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.6e-138 497.3 589 51.6
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.1e-138 496.9 522 54.4
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.7e-138 496.5 513 55.0
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 7.9e-138 495.0 532 53.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.8e-137 493.8 589 50.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.9e-137 492.7 599 50.8
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.3e-136 489.6 514 54.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.3e-136 489.2 615 50.1
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.1e-134 484.6 590 49.7
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 4.1e-134 482.6 504 54.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.2e-133 481.1 584 49.5
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.5e-133 480.7 583 50.3
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 5.9e-133 478.8 501 54.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.7e-130 469.9 584 48.8
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.8e-129 467.2 499 52.5
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 3.0e-129 466.5 498 53.4
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 3.3e-128 463.0 588 48.1
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.3e-127 461.1 494 54.0
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 8.2e-127 458.4 591 46.9
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 7.0e-126 455.3 485 54.2
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 2.6e-125 453.4 523 49.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 4.5e-125 452.6 489 52.8
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 7.7e-125 451.8 590 49.0
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 3.8e-124 449.5 565 48.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.1e-123 448.0 509 50.7
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.9e-123 447.2 548 48.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 5.5e-123 445.7 634 45.7
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 7.2e-123 445.3 576 47.7
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 9.4e-123 444.9 604 44.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.2e-122 444.5 563 48.1
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.1e-122 443.7 503 51.9
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.4e-121 441.0 568 47.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 6.7e-121 438.7 597 45.7
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.7e-120 435.6 562 47.9
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-119 433.3 583 47.2
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-119 433.3 583 47.2
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 4.8e-119 432.6 648 45.2
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.2e-119 431.8 560 46.4
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 5.3e-118 429.1 512 48.0
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.3e-116 424.5 515 47.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.2e-116 423.7 594 45.5
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.5e-115 421.0 433 55.7
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.2e-115 419.5 569 47.5
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 7.2e-115 418.7 502 47.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 2.1e-114 417.2 553 47.4
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.6e-114 416.4 609 43.3
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 4.7e-114 416.0 591 47.2
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.8e-113 414.1 509 47.0
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.3e-113 413.7 509 45.6
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.0e-113 413.3 518 47.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.5e-112 411.0 554 46.2
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.0e-112 410.6 476 47.7
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.4e-112 409.8 572 45.8
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 4.4e-112 409.5 408 54.2
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 9.7e-112 408.3 516 44.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.7e-111 407.5 510 46.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.8e-110 404.1 444 51.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.8e-110 404.1 535 43.2
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.1e-110 402.9 513 47.0
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.0e-109 400.6 560 43.8
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.0e-109 400.6 608 43.6
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 4.5e-109 399.4 431 52.4
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.9e-109 399.1 503 45.1
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 8.5e-108 395.2 487 47.4
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 3.6e-106 389.8 538 43.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.8e-105 385.6 424 51.4
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.2e-104 384.8 418 51.2
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.5e-104 384.4 413 52.3
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.8e-102 377.5 540 44.4
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.8e-102 377.5 552 43.7
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.0e-102 375.6 580 40.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 9.1e-102 375.2 532 43.4
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 5.9e-101 372.5 547 42.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 5.9e-101 372.5 545 42.2
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 7.7e-101 372.1 579 39.9
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.0e-100 371.7 523 45.5
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.2e-98 364.8 462 47.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.8e-98 363.6 577 41.4
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.8e-97 360.9 539 41.9
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.8e-97 360.9 402 53.5
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 2.3e-97 360.5 477 42.8
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 8.9e-97 358.6 491 47.3
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.2e-96 358.2 453 44.4
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 2.0e-96 357.5 486 44.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.6e-96 357.1 534 41.8
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.4e-96 356.3 579 39.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 4.9e-95 352.8 502 42.4
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 8.3e-95 352.1 502 42.4
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 8.3e-95 352.1 502 42.4
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-94 350.9 505 42.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 9.2e-94 348.6 462 44.8
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.6e-93 347.8 483 43.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.5e-91 340.5 581 39.4
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.8e-90 337.0 309 55.3
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.1e-89 333.6 491 43.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.5e-88 331.3 473 45.0
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.7e-85 320.5 573 38.0
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.3e-84 317.4 584 38.7
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.9e-84 316.6 489 41.3
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 7.3e-83 312.4 511 40.7
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.4e-81 308.1 486 39.3
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.3e-79 301.6 232 61.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.4e-71 272.7 431 46.4
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.1e-66 257.7 325 48.6
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.8e-65 252.7 508 37.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 5.8e-64 249.6 319 49.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.2e-61 241.9 340 45.9
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.1e-60 236.5 358 39.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.9e-56 222.2 289 49.5
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.8e-55 220.3 171 65.5
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.5e-53 213.8 172 61.6
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 7.9e-45 186.0 363 35.8
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.0e-44 185.7 235 43.4
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 3.9e-44 183.7 394 33.8
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 5.1e-44 183.3 377 35.3
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.0e-39 169.1 348 33.9
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.2e-38 163.7 138 58.7
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 2.6e-32 144.4 334 34.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.2e-31 141.4 289 32.5
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.8e-31 140.6 403 28.8
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.0e-28 131.0 625 25.0
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 5.1e-28 130.2 216 38.0
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 8.7e-28 129.4 130 48.5
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.5e-24 117.1 285 30.2
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.7e-24 116.3 207 34.8
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-22 112.5 101 61.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.9e-22 111.7 89 57.3
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.9e-22 111.7 89 57.3
Lsat_1_v5_gn_6_47440 Lactuca sativa HOM05D004947 ORTHO05D006077 1.9e-22 111.7 156 52.6
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 2.7e-21 107.8 486 25.9
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 2.7e-21 107.8 486 25.9
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 2.7e-21 107.8 486 25.9
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 9.7e-19 99.4 319 27.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 2.8e-18 97.8 491 25.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 2.8e-18 97.8 491 25.1
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-17 93.6 257 27.6
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.3e-17 93.6 106 53.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.1e-17 92.8 499 24.6
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 9.4e-06 56.2 55 47.3


User provided reference genes

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