Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0444101 Helianthus annuus HOM05D008481 ORTHO05D010853 5.0e-276 953.7 461 100.0
HanXRQChr06g0165321 Helianthus annuus HOM05D008481 ORTHO05D010853 1.1e-267 926.0 461 96.5
HanXRQChr17g0537341 Helianthus annuus HOM05D008481 ORTHO05D010853 4.8e-186 654.8 486 66.9
HanXRQChr01g0028171 Helianthus annuus HOM05D008481 ORTHO05D010853 2.4e-185 652.5 402 76.4
HanXRQChr04g0119441 Helianthus annuus HOM05D008481 ORTHO05D010853 6.5e-183 644.4 485 66.4
HanXRQChr13g0425251 Helianthus annuus HOM05D008481 ORTHO05D010853 1.7e-175 619.8 462 63.6
HanXRQChr13g0403351 Helianthus annuus HOM05D008481 ORTHO05D010853 1.4e-164 583.6 444 61.7
HanXRQChr09g0247291 Helianthus annuus HOM05D000103 ORTHO05D000049 3.4e-163 578.9 459 59.7
HanXRQChr03g0080651 Helianthus annuus HOM05D008481 ORTHO05D010853 2.4e-161 572.8 461 57.9
HanXRQChr08g0221501 Helianthus annuus HOM05D008481 ORTHO05D010853 2.4e-161 572.8 460 58.0
HanXRQChr13g0424211 Helianthus annuus HOM05D008481 ORTHO05D010853 7.7e-160 567.8 461 57.3
HanXRQChr11g0333451 Helianthus annuus HOM05D008481 ORTHO05D010853 7.0e-153 544.7 453 56.3
HanXRQChr04g0098781 Helianthus annuus HOM05D008481 ORTHO05D010853 9.2e-153 544.3 461 55.5
HanXRQChr10g0279551 Helianthus annuus HOM05D008481 ORTHO05D010853 2.7e-152 542.7 459 55.3
HanXRQChr14g0447151 Helianthus annuus HOM05D000026 ORTHO05D000127 2.7e-152 542.7 458 55.9
HanXRQChr13g0424061 Helianthus annuus HOM05D000009 ORTHO05D010853 4.6e-152 542.0 458 55.7
HanXRQChr04g0119421 Helianthus annuus HOM05D008481 ORTHO05D010853 2.3e-151 539.7 459 55.6
HanXRQChr11g0323671 Helianthus annuus HOM05D008481 ORTHO05D010853 2.3e-151 539.7 457 54.5
HanXRQChr05g0132501 Helianthus annuus HOM05D008481 ORTHO05D010853 5.0e-151 538.5 450 56.0
HanXRQChr06g0176691 Helianthus annuus HOM05D008481 ORTHO05D010853 1.9e-150 536.6 449 56.8
HanXRQChr13g0404711 Helianthus annuus HOM05D008481 ORTHO05D010853 1.9e-150 536.6 451 54.8
HanXRQChr01g0014081 Helianthus annuus HOM05D008481 ORTHO05D010853 3.3e-150 535.8 453 55.6
HanXRQChr13g0421041 Helianthus annuus HOM05D008481 ORTHO05D010853 2.7e-128 463.0 473 50.5
HanXRQChr03g0068141 Helianthus annuus HOM05D008481 ORTHO05D010853 3.4e-123 446.0 466 48.1
HanXRQChr08g0216321 Helianthus annuus HOM05D000374 ORTHO05D000238 1.7e-122 443.7 449 48.6
HanXRQChr10g0292931 Helianthus annuus HOM05D008481 ORTHO05D010853 1.1e-121 441.0 319 60.8
HanXRQChr13g0406131 Helianthus annuus HOM05D008481 ORTHO05D010853 3.5e-120 436.0 494 45.7
HanXRQChr15g0467161 Helianthus annuus HOM05D008481 ORTHO05D010853 2.3e-119 433.3 457 46.0
HanXRQChr04g0099031 Helianthus annuus HOM05D008481 ORTHO05D010853 1.9e-118 430.3 328 59.5
HanXRQChr10g0304581 Helianthus annuus HOM05D008481 ORTHO05D010853 9.0e-116 421.4 466 46.1
HanXRQChr02g0036691 Helianthus annuus HOM05D008481 ORTHO05D010853 1.1e-113 414.5 375 51.5
HanXRQChr05g0143231 Helianthus annuus HOM05D008481 ORTHO05D010853 2.6e-107 393.3 475 43.6
HanXRQChr06g0175741 Helianthus annuus HOM05D008481 ORTHO05D010853 1.9e-105 387.1 507 40.6
HanXRQChr03g0068301 Helianthus annuus HOM05D008481 ORTHO05D010853 3.0e-103 379.8 430 44.4
HanXRQChr14g0443501 Helianthus annuus HOM05D001485 ORTHO05D001384 1.4e-100 370.9 456 42.5
HanXRQChr11g0345591 Helianthus annuus HOM05D008481 ORTHO05D010853 4.6e-96 355.9 399 47.1
HanXRQChr09g0238771 Helianthus annuus HOM05D008481 ORTHO05D010853 1.3e-93 347.8 269 58.7
HanXRQChr12g0372911 Helianthus annuus HOM05D008481 ORTHO05D010853 2.8e-93 346.7 376 47.3
HanXRQChr04g0123551 Helianthus annuus HOM05D008481 ORTHO05D010853 1.1e-92 344.7 322 51.6
HanXRQChr17g0545601 Helianthus annuus HOM05D008481 ORTHO05D010853 2.1e-88 330.5 412 42.2
HanXRQChr05g0131281 Helianthus annuus HOM05D008481 ORTHO05D010853 4.6e-80 302.8 307 46.9
HanXRQChr06g0175731 Helianthus annuus HOM05D008481 ORTHO05D010853 1.4e-63 248.1 286 44.4
HanXRQChr02g0039311 Helianthus annuus HOM05D008481 ORTHO05D010853 1.2e-62 245.0 216 52.3
HanXRQChr06g0178781 Helianthus annuus HOM05D008481 ORTHO05D010853 3.8e-58 229.9 357 38.1
HanXRQChr07g0196561 Helianthus annuus HOM05D008481 ORTHO05D010853 1.2e-56 224.9 462 32.5
HanXRQChr02g0035101 Helianthus annuus HOM05D008481 ORTHO05D010853 6.1e-56 222.6 419 34.1
HanXRQChr13g0423431 Helianthus annuus HOM05D008481 ORTHO05D010853 1.7e-50 204.5 183 54.1
HanXRQChr17g0555551 Helianthus annuus HOM05D000430 ORTHO05D010853 1.7e-42 177.9 167 49.1
HanXRQChr10g0293981 Helianthus annuus HOM05D000352 ORTHO05D010853 4.7e-40 169.9 142 52.1
ECA247G0145 Erigeron canadensis HOM05D008481 ORTHO05D020572 2.3e-31 141.0 382 28.3
HanXRQChr04g0116991 Helianthus annuus HOM05D000103 ORTHO05D000049 1.2e-30 138.7 376 27.4
HanXRQChr11g0332071 Helianthus annuus HOM05D002629 ORTHO05D015691 1.4e-28 131.7 418 25.8
HanXRQChr03g0093141 Helianthus annuus HOM05D002629 ORTHO05D003221 3.2e-28 130.6 364 27.7
HanXRQChr06g0175721 Helianthus annuus HOM05D000259 ORTHO05D000155 7.0e-28 129.4 477 23.7
HanXRQChr13g0423421 Helianthus annuus HOM05D008481 ORTHO05D010853 1.6e-27 128.3 162 42.6
HanXRQChr01g0009301 Helianthus annuus HOM05D002629 ORTHO05D015691 2.0e-27 127.9 440 25.9
HanXRQChr01g0014131 Helianthus annuus HOM05D002629 ORTHO05D015691 6.0e-27 126.3 364 27.2
HanXRQChr08g0223151 Helianthus annuus HOM05D002629 ORTHO05D015691 6.0e-27 126.3 364 27.2
HanXRQChr13g0421571 Helianthus annuus HOM05D002629 ORTHO05D015691 6.0e-27 126.3 364 27.2
HanXRQChr13g0421581 Helianthus annuus HOM05D002629 ORTHO05D015691 6.0e-27 126.3 364 27.2
HanXRQChr02g0054601 Helianthus annuus HOM05D002629 ORTHO05D015691 1.0e-26 125.6 376 26.9
HanXRQChr16g0527861 Helianthus annuus HOM05D002629 ORTHO05D015691 2.3e-26 124.4 364 26.9
ECA240G4703 Erigeron canadensis HOM05D008481 ORTHO05D020572 3.3e-25 120.6 373 27.1
HanXRQChr07g0196831 Helianthus annuus HOM05D002629 ORTHO05D015691 4.3e-25 120.2 321 27.1
ECA247G2483 Erigeron canadensis HOM05D008481 ORTHO05D020572 7.3e-25 119.4 397 25.9
HanXRQChr13g0387641 Helianthus annuus HOM05D002629 ORTHO05D015691 2.1e-19 101.3 307 25.7
HanXRQChr01g0016981 Helianthus annuus HOM05D002629 ORTHO05D015691 3.9e-18 97.1 164 32.3
ECA238G1460 Erigeron canadensis HOM05D008481 ORTHO05D020572 1.2e-14 85.5 204 31.9
ECA236G1121 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-14 84.0 224 28.6
HanXRQChr01g0010101 Helianthus annuus HOM05D002629 ORTHO05D015691 2.4e-12 77.8 311 23.8
MSTRG.17282 Avicennia marina HOM05D000773 ORTHO05D000588 7.1e-12 76.3 182 30.2
HanXRQChr13g0426641 Helianthus annuus HOM05D000773 ORTHO05D000588 2.1e-11 74.7 129 31.0
ECA246G5016 Erigeron canadensis HOM05D008481 ORTHO05D020572 2.7e-11 74.3 280 26.1
Peaxi162Scf00020g00813 Petunia axillaris HOM05D000773 ORTHO05D000588 1.0e-10 72.4 130 36.2
Lsat_1_v5_gn_3_137381 Lactuca sativa HOM05D000773 ORTHO05D000588 1.7e-10 71.6 122 27.9
Nitab4.5_0001702g0140 Nicotiana tabacum HOM05D000773 ORTHO05D000588 3.0e-10 70.9 137 32.8
Sopen05g028320 Solanum pennellii HOM05D000773 ORTHO05D000588 3.9e-10 70.5 145 32.4
Peaxi162Scf00191g01433 Petunia axillaris HOM05D000773 ORTHO05D000588 6.6e-10 69.7 184 25.5
HanXRQChr15g0467201 Helianthus annuus HOM05D000002 ORTHO05D000001 8.7e-10 69.3 154 26.0
MD01G1101100 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-09 68.9 164 24.4
HanXRQChr10g0279691 Helianthus annuus HOM05D000129 ORTHO05D000144 1.5e-09 68.6 146 25.3
Hma1.2p1_2049F.1_g312480 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-09 68.6 151 27.2
Nitab4.5_0003779g0070 Nicotiana tabacum HOM05D000773 ORTHO05D000588 1.5e-09 68.6 136 31.6
PGSC0003DMG400021657 Solanum tuberosum HOM05D000773 ORTHO05D000588 1.5e-09 68.6 135 32.6
DCAR_006936 Daucus carota HOM05D000773 ORTHO05D000588 1.9e-09 68.2 109 32.1
ECA240G3418 Erigeron canadensis HOM05D000773 ORTHO05D000588 3.3e-09 67.4 134 32.1
HanXRQChr02g0038571 Helianthus annuus HOM05D000002 ORTHO05D000001 4.3e-09 67.0 182 25.3
CAN.G78.96 Capsicum annuum HOM05D000773 ORTHO05D000588 5.6e-09 66.6 105 34.3
Solyc05g049960.4 Solanum lycopersicum HOM05D000773 ORTHO05D000588 5.6e-09 66.6 145 31.7
Actinidia02834 Actinidia chinensis HOM05D000773 ORTHO05D000588 7.3e-09 66.2 186 27.4
HanXRQChr12g0366491 Helianthus annuus HOM05D000002 ORTHO05D000001 7.3e-09 66.2 154 25.3
Nitab4.5_0000583g0230 Nicotiana tabacum HOM05D000773 ORTHO05D000588 1.2e-08 65.5 116 31.0
ECA246G4004 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.6e-08 65.1 186 22.0
SalBow3G0125 Salvia bowleyana HOM05D000773 ORTHO05D000588 1.6e-08 65.1 121 32.2
CSS0005727 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-08 64.7 155 26.5
Gorai.008G120900 Gossypium raimondii HOM05D000773 ORTHO05D000588 2.8e-08 64.3 94 28.7
TWI59G0423 Tripterygium wilfordii HOM05D000773 ORTHO05D000588 2.8e-08 64.3 126 32.5
DCAR_008615 Daucus carota HOM05D000773 ORTHO05D000588 3.6e-08 63.9 115 29.6
HanXRQChr02g0045931 Helianthus annuus HOM05D000583 ORTHO05D000442 3.6e-08 63.9 64 39.1
AL6G45830 Arabidopsis lyrata HOM05D000773 ORTHO05D000588 4.7e-08 63.5 96 31.2
SalBow1G2326 Salvia bowleyana HOM05D000773 ORTHO05D000588 4.7e-08 63.5 140 29.3
HanXRQChr09g0272931 Helianthus annuus HOM05D000002 ORTHO05D000001 6.2e-08 63.2 193 26.4
HanXRQChr11g0351931 Helianthus annuus HOM05D001126 ORTHO05D000991 6.2e-08 63.2 67 37.3
GSVIVG01027004001 Vitis vinifera HOM05D000773 ORTHO05D000588 8.1e-08 62.8 89 33.7
ECA248G2246 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-07 62.4 232 22.0
vmacro20920 Vaccinium macrocarpon HOM05D000773 ORTHO05D000588 1.4e-07 62.0 84 34.5
ECA234G1582 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-07 61.6 200 24.0
Gohir.A12G108400 Gossypium hirsutum HOM05D000773 ORTHO05D000588 1.8e-07 61.6 94 27.7
Nn1g02421 Nelumbo nucifera HOM05D000002 ORTHO05D000001 1.8e-07 61.6 159 23.3
RcHm_v2.0_Chr1g0330731 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-07 61.6 151 24.5
RcHm_v2.0_Chr7g0237911 Rosa chinensis HOM05D000002 ORTHO05D000001 1.8e-07 61.6 151 24.5
ECA246G4120 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-07 60.8 180 22.8
Hma1.2p1_1768F.1_g301590 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.1e-07 60.8 166 25.3
Hma1.2p1_1719F.1_g299230 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.0e-07 60.5 163 24.5
Sabra15G0058200 Salix brachista HOM05D000002 ORTHO05D000001 4.0e-07 60.5 190 22.1
Ah.05g180450 Amaranthus hybridus HOM05D000773 ORTHO05D000588 5.2e-07 60.1 88 35.2
FvH4_3g12332 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-07 60.1 159 25.2
FvH4_4g30902 Fragaria vesca HOM05D000002 ORTHO05D000001 5.2e-07 60.1 159 25.2
HanXRQChr02g0050541 Helianthus annuus HOM05D000002 ORTHO05D000001 5.2e-07 60.1 153 24.8
Nitab4.5_0006018g0020 Nicotiana tabacum HOM05D000773 ORTHO05D000588 5.2e-07 60.1 116 31.9
PGSC0003DMG400013513 Solanum tuberosum HOM05D000002 ORTHO05D000001 5.2e-07 60.1 171 23.4
GSVIVG01037631001 Vitis vinifera HOM05D000092 ORTHO05D000042 5.2e-07 60.1 187 23.0
CiPaw.12G091700 Carya illinoinensis HOM05D000773 ORTHO05D000588 6.9e-07 59.7 139 29.5
Aa31LG1G27440 Aethionema arabicum HOM05D000773 ORTHO05D000588 9.0e-07 59.3 129 29.5
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 9.0e-07 59.3 66 34.8
AUR62022587 Chenopodium quinoa HOM05D000773 ORTHO05D000588 9.0e-07 59.3 108 30.6
Ciclev10019137m.g Citrus clementina HOM05D000773 ORTHO05D000588 9.0e-07 59.3 84 32.1
Manes.01G255100 Manihot esculenta HOM05D000773 ORTHO05D000588 9.0e-07 59.3 122 27.0
SHI05323 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-07 59.3 143 23.1
SHI52580 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-07 59.3 143 23.1
SHI53128 Sapria himalayana HOM05D000002 ORTHO05D000001 9.0e-07 59.3 143 23.1
Sc26g0000860 Simmondsia chinensis HOM05D000773 ORTHO05D000588 9.0e-07 59.3 95 31.6
Atru.chr5.519 Acer truncatum HOM05D000773 ORTHO05D000588 1.2e-06 58.9 90 32.2
Cpa.g.sc1258.5 Carica papaya HOM05D000773 ORTHO05D000588 1.2e-06 58.9 66 34.8
RcHm_v2.0_Chr5g0056061 Rosa chinensis HOM05D000002 ORTHO05D000001 1.2e-06 58.9 159 24.5
Sabra17G0031400 Salix brachista HOM05D000002 ORTHO05D000001 1.2e-06 58.9 185 22.2
SHI04496 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-06 58.9 174 25.9
SHI16435 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-06 58.9 167 25.1
PGSC0003DMG400000178 Solanum tuberosum HOM05D000773 ORTHO05D000588 1.2e-06 58.9 93 33.3
EL10Ac1g00395 Beta vulgaris HOM05D000773 ORTHO05D000588 1.5e-06 58.5 226 24.8
CSS0015467 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-06 58.5 162 24.7
Haze_08806 Corylus avellana HOM05D000773 ORTHO05D000588 1.5e-06 58.5 124 28.2
ECA240G1981 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-06 58.5 163 22.7
SHI07801 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-06 58.5 172 25.6
Solyc01g094820.3 Solanum lycopersicum HOM05D000773 ORTHO05D000588 1.5e-06 58.5 65 35.4
Sopen12g026370 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-06 58.5 155 24.5
ECA248G1913 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-06 58.2 266 21.1
Lj7A510G35 Lonicera japonica HOM05D000773 ORTHO05D000588 2.0e-06 58.2 93 32.3
Nitab4.5_0004114g0010 Nicotiana tabacum HOM05D000773 ORTHO05D000588 2.0e-06 58.2 98 31.6
AUR62004382 Chenopodium quinoa HOM05D000773 ORTHO05D000588 2.6e-06 57.8 124 27.4
ECA232G1928 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.6e-06 57.8 167 21.6
Nitab4.5_0001522g0090 Nicotiana tabacum HOM05D000773 ORTHO05D000588 2.6e-06 57.8 98 31.6
RcHm_v2.0_Chr1g0329831 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-06 57.8 152 26.3
GSVIVG01038695001 Vitis vinifera HOM05D000906 ORTHO05D000713 2.6e-06 57.8 187 23.0
Cfa012207 Carpinus fangiana HOM05D000773 ORTHO05D000588 3.4e-06 57.4 124 27.4
AUR62010710 Chenopodium quinoa HOM05D000773 ORTHO05D000588 3.4e-06 57.4 68 36.8
AUR62027257 Chenopodium quinoa HOM05D000773 ORTHO05D000588 3.4e-06 57.4 68 36.8
Hma1.2p1_0171F.1_g075850 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.4e-06 57.4 155 23.9
Potri.014G086700 Populus trichocarpa HOM05D000773 ORTHO05D000588 3.4e-06 57.4 91 28.6
SEGI_07554 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 3.4e-06 57.4 159 23.9
Sc22g0005520 Simmondsia chinensis HOM05D000773 ORTHO05D000588 3.4e-06 57.4 66 31.8
ATR0680G408 Amborella trichopoda HOM05D000773 ORTHO05D000588 4.4e-06 57.0 66 39.4
HanXRQChr09g0257981 Helianthus annuus HOM05D008481 ORTHO05D226677 4.4e-06 57.0 70 32.9
A09p27760 Brassica napus HOM05D000773 ORTHO05D000588 5.8e-06 56.6 130 28.5
BraA09t38346Z Brassica rapa HOM05D000773 ORTHO05D000588 5.8e-06 56.6 130 28.5
Rhsim09G0033700 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.8e-06 56.6 152 23.0
RcHm_v2.0_Chr4g0409151 Rosa chinensis HOM05D000002 ORTHO05D000001 5.8e-06 56.6 165 21.8
SHI12349 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-06 56.6 160 25.0
Hund11455 Selenicereus undatus HOM05D000773 ORTHO05D000588 5.8e-06 56.6 66 33.3
CSS0017873 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-06 56.2 160 24.4
Dinv32496 Davidia involucrata HOM05D000773 ORTHO05D000588 7.6e-06 56.2 84 31.0
ECA232G4777 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.6e-06 56.2 193 20.7
FvH4_7g13272 Fragaria vesca HOM05D000002 ORTHO05D000001 9.9e-06 55.8 157 22.3
Hma1.2p1_1123F.1_g259420 Hydrangea macrophylla HOM05D000773 ORTHO05D000588 9.9e-06 55.8 93 30.1
Hma1.2p1_1498F.1_g287120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.9e-06 55.8 165 21.8
RcHm_v2.0_Chr7g0198271 Rosa chinensis HOM05D000002 ORTHO05D000001 9.9e-06 55.8 163 22.1


User provided reference genes

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