Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 2.8e-103 378.6 193 100.0
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 2.2e-39 166.4 181 53.6
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.2e-31 139.8 238 47.1
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 2.2e-23 113.2 206 40.8
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 5.0e-20 102.1 215 36.3
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 8.6e-20 101.3 165 40.0
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 2.5e-19 99.8 167 40.7
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 3.3e-19 99.4 193 37.3
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 9.5e-19 97.8 190 36.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.2e-18 97.4 246 34.1
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.8e-18 96.3 252 32.5
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 2.8e-18 96.3 267 33.3
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.6e-18 95.9 193 36.8
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.4e-17 94.0 199 36.2
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 1.4e-17 94.0 196 36.2
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.3e-17 93.2 177 36.7
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 5.2e-17 92.0 187 36.9
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.8e-17 91.7 252 31.7
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 6.8e-17 91.7 222 34.2
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-16 90.9 161 37.3
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 1.2e-16 90.9 189 37.6
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 2.0e-16 90.1 185 36.8
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 2.6e-16 89.7 210 34.3
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 2.6e-16 89.7 210 34.3
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 5.8e-16 88.6 183 40.4
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 5.8e-16 88.6 235 34.5
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 7.5e-16 88.2 249 30.9
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 9.8e-16 87.8 249 33.3
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 9.8e-16 87.8 189 34.9
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.7e-15 87.0 212 35.8
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.7e-15 87.0 250 33.2
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.2e-15 86.7 246 31.7
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.4e-15 85.1 251 31.5
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 6.4e-15 85.1 223 32.7
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 6.4e-15 85.1 219 32.4
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 6.4e-15 85.1 216 33.3
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.3e-15 84.7 152 36.8
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 8.3e-15 84.7 152 36.8
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 8.3e-15 84.7 210 32.4
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.9e-14 83.6 161 36.0
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.9e-14 83.6 184 34.2
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 4.1e-14 82.4 223 34.1
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 4.1e-14 82.4 214 31.8
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 4.1e-14 82.4 229 31.9
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 7.1e-14 81.6 185 33.5
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 1.2e-13 80.9 201 31.8
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 1.6e-13 80.5 201 32.8
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 1.6e-13 80.5 201 32.8
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 1.6e-13 80.5 220 33.2
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 2.7e-13 79.7 190 35.3
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.7e-13 79.7 212 33.5
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 2.7e-13 79.7 213 31.9
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 4.6e-13 79.0 101 48.5
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 4.6e-13 79.0 205 36.1
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 4.6e-13 79.0 95 48.4
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 7.8e-13 78.2 212 34.4
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.7e-12 77.0 231 34.2
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.7e-12 77.0 185 33.0
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 2.3e-12 76.6 191 31.4
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 3.0e-12 76.3 123 41.5
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 5.1e-12 75.5 207 33.3
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 5.1e-12 75.5 211 30.8
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 6.6e-12 75.1 223 31.4
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 6.6e-12 75.1 170 35.9
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 6.6e-12 75.1 159 37.1
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 8.6e-12 74.7 198 31.3
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 1.5e-11 73.9 189 31.7
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.9e-11 73.6 240 28.8
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 1.9e-11 73.6 184 32.6
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 2.5e-11 73.2 220 29.5
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 4.3e-11 72.4 95 41.1
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 7.3e-11 71.6 227 30.4
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 7.3e-11 71.6 181 32.6
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 1.2e-10 70.9 185 35.1
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 1.2e-10 70.9 165 31.5
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 1.6e-10 70.5 195 31.3
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 2.1e-10 70.1 222 30.6
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.1e-10 70.1 102 44.1
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 2.8e-10 69.7 101 45.5
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 3.6e-10 69.3 210 29.5
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 3.6e-10 69.3 172 33.7
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 3.6e-10 69.3 228 30.7
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 3.6e-10 69.3 228 30.7
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 6.2e-10 68.6 221 31.7
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 6.2e-10 68.6 186 30.1
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 8.1e-10 68.2 217 31.8
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 1.1e-09 67.8 233 30.9
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 1.1e-09 67.8 163 31.3
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 1.1e-09 67.8 129 34.1
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 1.1e-09 67.8 101 41.6
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 1.4e-09 67.4 190 32.1
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 1.4e-09 67.4 197 31.5
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 1.4e-09 67.4 157 31.8
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.4e-09 67.4 219 30.6
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 1.8e-09 67.0 125 38.4
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.3e-09 66.6 111 38.7
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 4.0e-09 65.9 213 31.0
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 4.0e-09 65.9 173 31.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 4.0e-09 65.9 72 50.0
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 5.2e-09 65.5 235 28.9
C07p60100 Brassica napus HOM05D009953 ORTHO05D003195 6.8e-09 65.1 192 33.3
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 6.8e-09 65.1 215 31.6
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.2e-08 64.3 224 30.4
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 1.2e-08 64.3 224 30.4
BolC7t46450H Brassica oleracea HOM05D009953 ORTHO05D003195 1.5e-08 63.9 198 32.8
BcaB03g11864 Brassica carinata HOM05D009953 ORTHO05D003195 2.6e-08 63.2 189 32.8
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 3.4e-08 62.8 203 31.0
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 3.4e-08 62.8 220 28.2
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 3.4e-08 62.8 130 36.2
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 4.4e-08 62.4 129 40.3
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 5.8e-08 62.0 204 33.3
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 7.6e-08 61.6 100 35.0
vmacro04447 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 7.6e-08 61.6 163 31.3
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 7.6e-08 61.6 228 27.2
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 9.9e-08 61.2 211 30.8
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 9.9e-08 61.2 244 30.3
A03p62520 Brassica napus HOM05D009953 ORTHO05D003195 1.3e-07 60.8 189 33.3
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.7e-07 60.5 220 27.3
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.7e-07 60.5 245 26.5
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.7e-07 60.5 213 28.6
BraA03t15320Z Brassica rapa HOM05D009953 ORTHO05D003195 2.2e-07 60.1 187 33.7
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.2e-07 60.1 185 30.3
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 3.7e-07 59.3 103 35.0
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 3.7e-07 59.3 109 37.6
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 4.9e-07 58.9 121 35.5
Carub.0007s0642 Capsella rubella HOM05D009953 ORTHO05D003195 4.9e-07 58.9 192 29.7
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.9e-07 58.9 212 28.3
BcaNung03785 Brassica carinata HOM05D009953 ORTHO05D003195 8.4e-07 58.2 209 33.5
A08p17220 Brassica napus HOM05D009953 ORTHO05D003195 8.4e-07 58.2 176 33.5
C01p04800 Brassica napus HOM05D009953 ORTHO05D003195 8.4e-07 58.2 200 35.5
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 8.4e-07 58.2 190 33.7
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 1.9e-06 57.0 114 35.1
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 2.4e-06 56.6 110 35.5
BraA08t33685Z Brassica rapa HOM05D009953 ORTHO05D003195 2.4e-06 56.6 175 33.1
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 2.4e-06 56.6 94 39.4
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 2.4e-06 56.6 208 28.8
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 3.2e-06 56.2 193 30.6
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 4.1e-06 55.8 161 29.8
Thhalv10026267m.g Eutrema salsugineum HOM05D009953 ORTHO05D003195 4.1e-06 55.8 159 32.7
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 4.1e-06 55.8 183 31.1
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 5.4e-06 55.5 205 31.2
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 5.4e-06 55.5 205 31.2
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 5.4e-06 55.5 175 32.6
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.4e-06 55.5 71 47.9
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 7.1e-06 55.1 193 33.7
BraA01t00428Z Brassica rapa HOM05D009953 ORTHO05D003195 7.1e-06 55.1 182 33.0
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 7.1e-06 55.1 192 29.7
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 7.1e-06 55.1 170 30.0
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 7.1e-06 55.1 212 28.3


User provided reference genes

Program Settings