Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0436311 Helianthus annuus HOM05D036502 ORTHO05D222288 1.9e-148 529.3 280 100.0
HanXRQChr04g0109851 Helianthus annuus HOM05D003559 ORTHO05D003896 6.6e-21 105.5 57 91.2
HanXRQChr09g0269861 Helianthus annuus HOM05D003559 ORTHO05D003896 3.8e-16 89.7 69 66.7
HanXRQChr01g0016441 Helianthus annuus HOM05D036502 ORTHO05D224776 7.1e-15 85.5 43 97.7
HanXRQChr09g0255261 Helianthus annuus HOM05D036502 ORTHO05D000817 1.7e-13 80.9 46 87.0
Nitab4.5_0004342g0040 Nicotiana tabacum HOM05D000436 ORTHO05D003896 4.0e-10 69.7 65 58.5
vmacro12201 Vaccinium macrocarpon HOM05D003559 ORTHO05D003896 4.0e-10 69.7 71 53.5
PGSC0003DMG400023065 Solanum tuberosum HOM05D003559 ORTHO05D003896 4.9e-08 62.8 30 96.7
Sabra15G0077200 Salix brachista HOM05D003559 ORTHO05D003896 1.1e-07 61.6 33 84.8
Sopen03g033500 Solanum pennellii HOM05D003559 ORTHO05D003896 1.1e-07 61.6 31 90.3
Ah.11g044090 Amaranthus hybridus HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
CAN.G587.71 Capsicum annuum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Ca_02637_v3 Cicer arietinum L. HOM05D000436 ORTHO05D003896 1.4e-07 61.2 30 93.3
Duzib205G0101 Durio zibethinus HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
ECA232G4761 Erigeron canadensis HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
ECA247G3802 Erigeron canadensis HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Migut.D01587 Erythranthe guttata HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Gohir.A09G244200 Gossypium hirsutum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Gohir.D09G245100 Gossypium hirsutum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Gorai.006G269400 Gossypium raimondii HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
HanXRQChr16g0502041 Helianthus annuus HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Lsat_1_v5_gn_1_15700 Lactuca sativa HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Lsat_1_v5_gn_4_111820 Lactuca sativa HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Lalb_Chr08g0235361 Lupinus albus HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Medtr2g056000 Medicago truncatula HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Nitab4.5_0000208g0120 Nicotiana tabacum HOM05D000436 ORTHO05D003896 1.4e-07 61.2 30 93.3
Nitab4.5_0006132g0010 Nicotiana tabacum HOM05D000436 ORTHO05D003896 1.4e-07 61.2 30 93.3
Peaxi162Scf00119g00126 Petunia axillaris HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Psat1g027000 Pisum sativum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Potri.012G058200 Populus trichocarpa HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Solyc03g114400.3 Solanum lycopersicum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Solyc06g069310.3 Solanum lycopersicum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Sopen06g026570 Solanum pennellii HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
PGSC0003DMG400004076 Solanum tuberosum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
PGSC0003DMG401024603 Solanum tuberosum HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
SGA_v2.0_scaffold33G13364 Striga asiatica HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
TPR.G20734 Trifolium pratense HOM05D000436 ORTHO05D003896 1.4e-07 61.2 30 93.3
TPR.G2820 Trifolium pratense HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
unitig_21.g20428 Utricularia gibba HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
unitig_744.g24408 Utricularia gibba HOM05D003559 ORTHO05D003896 1.4e-07 61.2 30 93.3
Lalb_Chr23g0274121 Lupinus albus HOM05D003559 ORTHO05D003896 1.9e-07 60.8 30 90.0
VMungo1215G3031 Vigna mungo HOM05D003559 ORTHO05D003896 2.4e-07 60.5 31 87.1
BcaB01g05623 Brassica carinata HOM05D003559 ORTHO05D003896 4.2e-07 59.7 34 79.4
CAN.G781.4 Capsicum annuum HOM05D003559 ORTHO05D003896 4.2e-07 59.7 30 90.0
Atru.chr9.708 Acer truncatum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Actinidia18952 Actinidia chinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Actinidia31038 Actinidia chinensis HOM05D000436 ORTHO05D003896 5.4e-07 59.3 30 90.0
Aa31LG11G2580 Aethionema arabicum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
AL6G34280 Arabidopsis lyrata HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
AT5G23090 Arabidopsis thaliana HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
EL10Ac2g03673 Beta vulgaris HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
BcaB04g19888 Brassica carinata HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
BcaC04g23480 Brassica carinata HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
A09p07060 Brassica napus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
C09p07910 Brassica napus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
BolC9t53704H Brassica oleracea HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
BraA09t36354Z Brassica rapa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CSS0003476 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CSS0016530 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CSS0029845 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CANSAT80G0220 Cannabis sativa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Carub.0006s2088 Capsella rubella HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CARHR190440 Cardamine hirsuta HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Cpa.g.sc13.75 Carica papaya HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Cfa019843 Carpinus fangiana HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CiPaw.16G082800 Carya illinoinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
AUR62020662 Chenopodium quinoa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
AUR62028068 Chenopodium quinoa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Ca_02523_v3 Cicer arietinum L. HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
ClCG06G015130 Citrullus lanatus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Cc04_g07710 Coffea canephora HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
COL.COLO4_32191 Corchorus olitorius HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Haze_18574 Corylus avellana HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
MELO3C017276.2 Cucumis melo HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
CsaV3_1G003510 Cucumis sativus L. HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
DCAR_023145 Daucus carota HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Dinv36880 Davidia involucrata HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Dinv38604 Davidia involucrata HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Duzib068G0274 Durio zibethinus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Duzib084G1140 Durio zibethinus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Eucgr.B00669 Eucalyptus grandis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Thhalv10005056m.g Eutrema salsugineum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
FvH4_5g12901 Fragaria vesca HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
FAN08G2954 Fragaria x ananassa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
FAN13G1448 Fragaria x ananassa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
FAN18G1277 Fragaria x ananassa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Glyma.05G015100 Glycine max HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Glyma.06G209000 Glycine max HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Glyma.17G123600 Glycine max HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Gohir.A07G056700 Gossypium hirsutum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Gohir.D07G061000 Gossypium hirsutum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Gorai.001G064700 Gossypium raimondii HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Hma1.2p1_0340F.1_g130100 Hydrangea macrophylla HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Lj5A141T87 Lonicera japonica HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Lj1g0005945 Lotus japonicus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Lj4g0027798 Lotus japonicus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Lalb_Chr07g0178501 Lupinus albus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Lalb_Chr13g0302501 Lupinus albus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
MD06G1209300 Malus domestica HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
MD14G1219800 Malus domestica HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Manes.01G022100 Manihot esculenta HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Manes.05G117400 Manihot esculenta HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Nitab4.5_0000646g0080 Nicotiana tabacum HOM05D000436 ORTHO05D003896 5.4e-07 59.3 30 90.0
Nitab4.5_0001432g0150 Nicotiana tabacum HOM05D000436 ORTHO05D003896 5.4e-07 59.3 30 90.0
Nitab4.5_0005020g0040 Nicotiana tabacum HOM05D000436 ORTHO05D003896 5.4e-07 59.3 30 90.0
Oeu001006.1 Olea europaea HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Oeu031816.1 Olea europaea HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Peaxi162Scf00017g03040 Petunia axillaris HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Phvul.003G179300 Phaseolus vulgaris HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Phvul.009G201500 Phaseolus vulgaris HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Psat4g043760 Pisum sativum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Potri.015G052800 Populus trichocarpa HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Prupe.5G214400 Prunus persica HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
PGR083G0538 Punica granatum HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
QL10p022343 Quercus lobata HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
RhsimUnG0225600 Rhododendron simsii HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
RcHm_v2.0_Chr7g0184331 Rosa chinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Sabra12G0041700 Salix brachista HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
SalBow1G3465 Salvia bowleyana HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Sp2g24030 Schrenkiella parvula HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Sed0008282 Sechium edule HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Sed0024201 Sechium edule HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Hund19381 Selenicereus undatus HOM05D003559 ORTHO05D003896 5.4e-07 59.3 45 68.9
Sc09g0007430 Simmondsia chinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Sc23g0004420 Simmondsia chinensis HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
THA.LOC104819383 Tarenaya hassleriana HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
Thecc.03G115000 Theobroma cacao HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
TWI15G0382 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
TWI60G0348 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
TWI81G0966 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
VMungo1309G2871 Vigna mungo HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
GSVIVG01008215001 Vitis vinifera HOM05D003559 ORTHO05D003896 5.4e-07 59.3 30 90.0
SMO353G0032 Selaginella moellendorffii HOM05D003559 ORTHO05D003896 7.1e-07 58.9 30 86.7
Medtr4g112380 Medicago truncatula HOM05D003559 ORTHO05D003896 1.2e-06 58.2 30 90.0
Pp3c3_25870 Physcomitrium patens HOM05D003559 ORTHO05D003896 1.2e-06 58.2 42 69.0
HPP92_003792 Vanilla planifolia HOM05D003559 ORTHO05D003896 1.2e-06 58.2 30 86.7
Zm00001eb178500 Zea mays HOM05D003559 ORTHO05D003896 1.2e-06 58.2 30 86.7
Mapoly0053s0055 Marchantia polymorpha HOM05D003559 ORTHO05D003896 1.6e-06 57.8 30 83.3
Pp3c10_17500 Physcomitrium patens HOM05D003559 ORTHO05D003896 2.1e-06 57.4 41 70.7
Zm00001eb042490 Zea mays HOM05D003559 ORTHO05D003896 2.1e-06 57.4 30 86.7
Hma1.2p1_0595F.1_g186080 Hydrangea macrophylla HOM05D003559 ORTHO05D003896 2.7e-06 57.0 28 92.9
Lj9A433T100 Lonicera japonica HOM05D003559 ORTHO05D003896 2.7e-06 57.0 28 92.9
TAR622G1039 Trochodendron aralioides HOM05D003559 ORTHO05D003896 3.5e-06 56.6 30 83.3
Aa31LG3G18350 Aethionema arabicum HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
ATR0815G014 Amborella trichopoda HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 83.3
AL6G18600 Arabidopsis lyrata HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
AT5G08190 Arabidopsis thaliana HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
BcaB08g37276 Brassica carinata HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
BcaC03g13209 Brassica carinata HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
BcaC03g13210 Brassica carinata HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
A10p28480 Brassica napus HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
C02p03450 Brassica napus HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
C09p68750 Brassica napus HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
BolC9t59622H Brassica oleracea HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
BraA02t04945Z Brassica rapa HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
BraA10t44896Z Brassica rapa HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
Carub.0006s0709 Capsella rubella HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
CDE04G0696 Ceratophyllum demersum HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 83.3
CDE06G1451 Ceratophyllum demersum HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 83.3
Ciclev10022641m.g Citrus clementina HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
Thhalv10014894m.g Eutrema salsugineum HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
MBI10_g18305_MAGBIO Magnolia biondii HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 83.3
Nn4g23671 Nelumbo nucifera HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 83.3
Oeu008246.1 Olea europaea HOM05D003559 ORTHO05D003896 4.6e-06 56.2 28 89.3
Sp6g34750 Schrenkiella parvula HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
SGA_v2.0_scaffold33G13365 Striga asiatica HOM05D003559 ORTHO05D003896 4.6e-06 56.2 28 92.9
THA.LOC104800935 Tarenaya hassleriana HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 86.7
TAR371G0504 Trochodendron aralioides HOM05D003559 ORTHO05D003896 4.6e-06 56.2 30 83.3


User provided reference genes

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