Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 2.6e-42 174.9 83 100.0
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 1.6e-39 165.6 79 97.5
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 6.9e-35 150.2 80 90.0
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 6.9e-35 150.2 80 90.0
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 87.5
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 3.4e-34 147.9 80 88.8
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 4.5e-34 147.5 80 87.5
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.7e-34 146.7 80 87.5
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 7.7e-34 146.7 80 86.2
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 7.7e-34 146.7 80 87.5
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.0e-33 146.4 80 87.5
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 1.3e-33 146.0 80 86.2
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 2.9e-33 144.8 80 87.5
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 2.9e-33 144.8 80 87.5
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 2.9e-33 144.8 80 85.0
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.9e-33 144.8 80 87.5
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.9e-33 144.8 80 87.5
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 2.9e-33 144.8 80 87.5
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 85.0
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 3.8e-33 144.4 80 86.2
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 85.0
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 85.0
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 85.0
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 85.0
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 85.0
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 86.2
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 5.0e-33 144.1 80 87.5
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 6.5e-33 143.7 80 83.8
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 6.5e-33 143.7 80 86.2
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 6.5e-33 143.7 80 86.2
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 6.5e-33 143.7 80 86.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 6.5e-33 143.7 80 86.2
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 8.5e-33 143.3 80 85.0
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 8.5e-33 143.3 80 86.2
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.1e-32 142.9 80 82.5
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 1.4e-32 142.5 80 85.0
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 1.4e-32 142.5 80 85.0
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.4e-32 142.5 80 85.0
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.4e-32 142.5 80 85.0
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 85.0
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 83.8
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 85.0
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 83.8
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 83.8
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 83.8
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 83.8
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 85.0
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 1.9e-32 142.1 80 85.0
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 2.5e-32 141.7 87 78.2
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.2e-32 141.0 80 81.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.2e-32 141.0 79 86.1
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 5.5e-32 140.6 79 84.8
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 7.2e-32 140.2 92 77.2
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 7.2e-32 140.2 80 83.8
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 7.2e-32 140.2 80 83.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 1.6e-31 139.0 74 87.8
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 2.7e-31 138.3 80 83.8
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 2.7e-31 138.3 80 83.8
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.7e-31 138.3 80 83.8
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 3.6e-31 137.9 80 83.8
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 3.6e-31 137.9 80 83.8
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 3.6e-31 137.9 80 83.8
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 3.6e-31 137.9 80 83.8
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 3.6e-31 137.9 80 83.8
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 3.6e-31 137.9 80 83.8
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 4.7e-31 137.5 80 82.5
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 6.1e-31 137.1 80 78.8
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 7.9e-31 136.7 77 83.1
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 7.9e-31 136.7 80 82.5
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 7.9e-31 136.7 80 80.0
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 7.9e-31 136.7 80 83.8
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.0e-30 136.3 80 81.2
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.0e-30 136.3 80 81.2
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 1.8e-30 135.6 78 83.3
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 2.3e-30 135.2 80 81.2
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 3.0e-30 134.8 80 80.0
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 8.8e-30 133.3 80 80.0
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 1.1e-29 132.9 77 83.1
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 1.1e-29 132.9 80 78.8
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 1.1e-29 132.9 78 79.5
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.5e-29 132.5 80 77.5
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 2.6e-29 131.7 83 74.7
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 1.3e-28 129.4 80 77.5
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 1.3e-28 129.4 78 80.8
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 2.2e-28 128.6 80 76.2
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.4e-27 125.9 80 73.8
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.5e-26 121.3 79 72.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.5e-26 121.3 79 72.2
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.2e-24 114.8 67 83.6
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.2e-23 112.8 77 74.0
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 2.7e-23 111.7 55 92.7
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 8.8e-22 106.7 87 63.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 2.0e-18 95.5 45 93.3
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.7e-18 95.1 55 81.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 5.9e-18 94.0 61 77.0
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.3e-17 92.8 46 89.1
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 1.3e-17 92.8 45 93.3
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 2.2e-17 92.0 79 51.9
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.5e-17 90.1 45 88.9
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 9.4e-16 86.7 80 52.5
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 3.6e-15 84.7 79 49.4
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 5.2e-14 80.9 45 77.8
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 1.1e-11 73.2 43 81.4
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.8e-11 72.4 54 64.8


User provided reference genes

Program Settings