Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 4.6e-294 1013.8 516 100.0
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 1.7e-224 782.7 552 74.6
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 9.1e-210 733.8 523 73.4
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 1.1e-167 594.0 554 56.5
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 7.3e-167 591.3 514 60.5
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 1.6e-166 590.1 543 56.7
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.5e-164 583.6 529 58.4
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 5.8e-164 581.6 537 58.5
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 1.6e-161 573.5 553 57.0
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 3.5e-161 572.4 549 55.7
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 6.0e-161 571.6 541 57.5
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 1.7e-160 570.1 591 53.0
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 1.3e-158 563.9 548 55.8
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 2.1e-158 563.1 514 56.6
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 2.1e-158 563.1 538 55.2
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 3.6e-158 562.4 540 56.1
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 3.6e-158 562.4 539 55.5
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 1.4e-157 560.5 538 54.3
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 1.4e-157 560.5 536 56.0
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 1.8e-157 560.1 545 54.7
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 1.5e-156 557.0 549 54.8
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 5.8e-156 555.1 509 57.2
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 7.6e-156 554.7 601 52.2
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 1.7e-155 553.5 546 55.1
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 3.2e-154 549.3 529 54.3
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 4.2e-154 548.9 541 54.5
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 7.1e-154 548.1 555 54.1
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 9.3e-154 547.7 539 55.8
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 6.0e-153 545.0 521 54.3
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 2.3e-152 543.1 496 57.1
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 3.9e-152 542.3 497 56.9
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 3.9e-152 542.3 550 52.7
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 6.7e-152 541.6 539 55.5
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 6.7e-152 541.6 539 55.7
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 6.7e-152 541.6 504 55.8
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 1.1e-151 540.8 528 54.7
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 2.5e-151 539.7 534 56.0
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 4.8e-150 535.4 495 57.0
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 1.1e-149 534.3 512 54.3
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 1.1e-149 534.3 519 54.3
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 1.4e-149 533.9 495 59.0
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 1.8e-149 533.5 540 54.6
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 9.0e-149 531.2 506 55.5
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 2.6e-148 529.6 515 54.2
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 5.8e-148 528.5 532 53.6
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 1.7e-147 526.9 462 60.0
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 1.4e-146 523.9 520 53.5
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 1.2e-145 520.8 503 55.3
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 1.2e-145 520.8 516 52.9
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 1.6e-145 520.4 496 55.2
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 2.1e-145 520.0 510 55.3
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 2.7e-145 519.6 514 53.3
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 1.3e-144 517.3 545 51.9
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 1.8e-144 516.9 535 53.1
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 1.5e-143 513.8 483 55.3
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 1.9e-143 513.5 492 55.7
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 1.9e-143 513.5 471 56.5
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 3.3e-143 512.7 504 53.2
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 7.4e-143 511.5 504 53.0
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 7.4e-143 511.5 496 55.4
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 9.6e-143 511.1 504 53.0
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 9.6e-143 511.1 528 53.4
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 1.3e-142 510.8 491 55.0
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 3.7e-142 509.2 495 55.8
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 4.8e-142 508.8 491 54.8
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 6.2e-142 508.4 489 55.0
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 2.6e-140 503.1 497 53.7
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 2.6e-140 503.1 485 53.6
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 5.8e-140 501.9 568 48.8
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 1.3e-139 500.7 504 52.8
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 1.3e-139 500.7 511 52.1
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 1.3e-139 500.7 511 52.1
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 2.9e-139 499.6 548 50.0
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 2.5e-138 496.5 527 51.6
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 2.3e-136 490.0 407 63.6
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 5.1e-136 488.8 488 53.1
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 1.5e-135 487.3 497 51.7
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 6.3e-134 481.9 409 60.9
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 1.1e-133 481.1 500 52.4
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.4e-133 480.7 479 54.7
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 4.1e-133 479.2 492 53.3
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 4.1e-133 479.2 513 49.5
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 7.7e-132 474.9 580 46.7
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 2.5e-130 469.9 521 47.6
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 5.5e-130 468.8 534 48.5
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 2.5e-127 459.9 506 49.4
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 5.7e-127 458.8 540 47.8
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 1.8e-125 453.8 462 52.4
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 4.5e-124 449.1 541 48.6
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 2.5e-122 443.4 516 50.6
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 9.4e-122 441.4 466 50.2
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 1.5e-119 434.1 349 61.6
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 2.0e-119 433.7 382 60.2
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.8e-118 429.9 484 50.4
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 5.3e-117 425.6 252 77.8
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 2.0e-116 423.7 313 67.1
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 5.5e-106 389.0 253 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 2.0e-103 380.6 533 40.9
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 5.7e-103 379.0 536 41.8
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 3.5e-100 369.8 547 39.9
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 3.0e-88 330.1 225 68.9
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 3.0e-88 330.1 254 64.2
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 6.8e-88 328.9 431 45.2
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 3.3e-82 310.1 382 49.2
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 4.0e-80 303.1 255 55.3
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 1.2e-76 291.6 212 63.2
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 8.0e-73 278.9 456 37.5
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 3.2e-69 266.9 246 56.9
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 5.4e-53 213.0 248 43.5
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 2.2e-46 191.0 280 36.4
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 1.4e-45 188.3 122 71.3
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 2.9e-38 164.1 221 44.8
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.6e-33 148.3 224 40.2
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 1.0e-30 139.0 193 40.9
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.6e-28 131.7 218 40.4
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 2.1e-28 131.3 105 63.8
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 1.5e-23 115.2 193 38.3
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 4.5e-23 113.6 311 27.7
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 2.1e-20 104.8 179 36.3
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 7.9e-20 102.8 198 38.4
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 3.9e-19 100.5 220 30.9
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 5.3e-16 90.1 42 97.6
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.5e-15 88.6 101 41.6
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 2.2e-14 84.7 65 61.5
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 6.5e-14 83.2 155 38.7
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 1.9e-13 81.6 139 36.7
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 6.1e-12 76.6 65 55.4
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.9e-11 73.9 151 29.8
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 3.3e-10 70.9 169 30.8
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 7.4e-10 69.7 155 30.3
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 1.4e-08 65.5 39 71.8
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.6e-07 61.2 111 32.4


User provided reference genes

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