Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0428461 Helianthus annuus HOM05D001200 ORTHO05D009713 3.5e-27 124.0 55 100.0
C07p33440 Brassica napus HOM05D001200 ORTHO05D009713 1.1e-25 119.0 55 96.4
C09p24630 Brassica napus HOM05D001200 ORTHO05D009713 1.1e-25 119.0 55 96.4
C09p40200 Brassica napus HOM05D001200 ORTHO05D009713 1.1e-25 119.0 55 96.4
AL9U11952 Arabidopsis lyrata HOM05D001200 ORTHO05D009713 1.5e-25 118.6 54 96.3
C09p40360 Brassica napus HOM05D001200 ORTHO05D009713 3.3e-25 117.5 55 94.5
BolC9t56924H Brassica oleracea HOM05D001200 ORTHO05D009713 3.3e-25 117.5 55 94.5
MELO3C027236.2 Cucumis melo HOM05D001200 ORTHO05D009713 7.4e-25 116.3 55 94.5
Sed0023939 Sechium edule HOM05D001200 ORTHO05D009713 7.4e-25 116.3 55 94.5
Gorai.004G082100 Gossypium raimondii HOM05D001200 ORTHO05D009713 9.6e-25 115.9 55 92.7
CARHR258570 Cardamine hirsuta HOM05D001200 ORTHO05D009713 8.1e-24 112.8 55 92.7
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.0e-23 110.5 55 89.1
TPR.G30364 Trifolium pratense HOM05D001200 ORTHO05D009713 7.6e-22 106.3 49 95.9
MELO3C029829.2 Cucumis melo HOM05D001200 ORTHO05D009713 1.0e-21 105.9 55 85.5
Gohir.D08G077250 Gossypium hirsutum HOM05D001200 ORTHO05D009713 1.7e-21 105.1 55 85.5
TPR.G6643 Trifolium pratense HOM05D001044 ORTHO05D008486 3.8e-21 104.0 52 90.4
CAN.G8.22 Capsicum annuum HOM05D001200 ORTHO05D009713 1.1e-20 102.4 55 85.5
Glyma.18G155300 Glycine max HOM05D001200 ORTHO05D009713 1.9e-20 101.7 55 81.8
Lalb_Chr13g0292811 Lupinus albus HOM05D001200 ORTHO05D009713 2.7e-19 97.8 47 91.5
Potri.019G014344 Populus trichocarpa HOM05D001200 ORTHO05D009713 1.8e-18 95.1 55 78.2
CAN.G904.13 Capsicum annuum HOM05D001200 ORTHO05D009713 3.0e-18 94.4 46 87.0
Solyc02g011760.1 Solanum lycopersicum HOM05D001200 ORTHO05D009713 3.9e-18 94.0 49 87.8
BolC9t56806H Brassica oleracea HOM05D001200 ORTHO05D009713 2.5e-17 91.3 44 90.9
arahy.Tifrunner.gnm1.ann1.WH1VZM Arachis hypogaea HOM05D001200 ORTHO05D009713 2.8e-16 87.8 54 77.8
BraSC25t45909Z Brassica rapa HOM05D001200 ORTHO05D009713 6.2e-16 86.7 55 74.5
SMO086G0058 Selaginella moellendorffii HOM05D001200 ORTHO05D009713 1.8e-15 85.1 53 77.4
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 4.0e-15 84.0 55 72.7
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 4.0e-15 84.0 55 72.7
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 4.0e-15 84.0 55 72.7
BolSC45t60910H Brassica oleracea HOM05D001200 ORTHO05D009713 5.3e-15 83.6 55 72.7
Lalb_Chr18g0049421 Lupinus albus HOM05D001200 ORTHO05D009713 6.9e-15 83.2 50 78.0
BolC9t56926H Brassica oleracea HOM05D001200 ORTHO05D009713 1.5e-14 82.0 55 70.9
HanXRQChr00c0336g0573651 Helianthus annuus HOM05D001200 ORTHO05D009713 2.0e-14 81.6 55 70.9
HanXRQChr00c0504g0575301 Helianthus annuus HOM05D001200 ORTHO05D009713 2.0e-14 81.6 55 70.9
HanXRQChr09g0246671 Helianthus annuus HOM05D001200 ORTHO05D009713 2.0e-14 81.6 55 70.9
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 2.0e-14 81.6 55 70.9
ATCG01060 Arabidopsis thaliana HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BolC7t43855H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-14 80.9 38 94.7
BolSC29t60505H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BolSC35t60703H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BolSC37t60792H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BolSC46t60959H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BolSC49t61142H Brassica oleracea HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BraSC103t45428Z Brassica rapa HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BraSC143t45661Z Brassica rapa HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BraSC179t45775Z Brassica rapa HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
BraSC59t46550Z Brassica rapa HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
CAN.G1526.3 Capsicum annuum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
CAN.G1526.8 Capsicum annuum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
CAN.G278.4 Capsicum annuum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
Migut.D01253 Erythranthe guttata HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
Gohir.1Z049631 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
Gohir.A02G134400 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
Gohir.A09G046200 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
HanXRQChr08g0213671 Helianthus annuus HOM05D001200 ORTHO05D009713 3.4e-14 80.9 48 75.0
Hma1.2p1_0382F.1_g140210 Hydrangea macrophylla HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
Nn064s42211 Nelumbo nucifera HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
PSO548G0036 Papaver somniferum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
PGR111G0008 Punica granatum HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
RcHm_v2.0_Chr5g0017221 Rosa chinensis HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
RcHm_v2.0_Chr5g0043041 Rosa chinensis HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
RcHm_v2.0_CPg0502781 Rosa chinensis HOM05D001200 ORTHO05D009713 3.4e-14 80.9 55 70.9
C09p40340 Brassica napus HOM05D001200 ORTHO05D009713 4.5e-14 80.5 56 71.4
BraSC138t45535Z Brassica rapa HOM05D001200 ORTHO05D009713 4.5e-14 80.5 39 89.7
HanXRQChr02g0038661 Helianthus annuus HOM05D001200 ORTHO05D009713 5.8e-14 80.1 55 69.1
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 1.0e-13 79.3 55 69.1
Nn3g20217 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.3e-13 79.0 55 67.3
CAN.G965.7 Capsicum annuum HOM05D001200 ORTHO05D009713 1.7e-13 78.6 55 69.1
CsaV3_UNG210150 Cucumis sativus L. HOM05D001200 ORTHO05D009713 1.7e-13 78.6 55 67.3
C04p22670 Brassica napus HOM05D001200 ORTHO05D009713 2.2e-13 78.2 55 67.3
Gohir.D06G133600 Gossypium hirsutum HOM05D001200 ORTHO05D009713 2.2e-13 78.2 55 67.3
DCAR_032537 Daucus carota HOM05D001200 ORTHO05D009713 3.8e-13 77.4 55 69.1
Hund24329 Selenicereus undatus HOM05D001200 ORTHO05D009713 3.8e-13 77.4 56 71.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 6.5e-13 76.6 52 69.2
HanXRQChr09g0244731 Helianthus annuus HOM05D001200 ORTHO05D009713 8.4e-13 76.3 50 72.0
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 8.4e-13 76.3 51 70.6
Hund03918 Selenicereus undatus HOM05D001200 ORTHO05D009713 8.4e-13 76.3 59 64.4
Oeu043656.1 Olea europaea HOM05D001200 ORTHO05D009713 1.4e-12 75.5 55 65.5
Gorai.009G377500 Gossypium raimondii HOM05D001200 ORTHO05D009713 1.9e-12 75.1 55 65.5
Nn1g00557 Nelumbo nucifera HOM05D001200 ORTHO05D009713 1.9e-12 75.1 55 63.6
Hund10653 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-12 75.1 49 77.6
CARHR282430 Cardamine hirsuta HOM05D001200 ORTHO05D009713 4.2e-12 73.9 55 67.3
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.2e-12 73.9 55 65.5
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 5.5e-12 73.6 50 70.0
arahy.Tifrunner.gnm1.ann1.USFH3V Arachis hypogaea HOM05D001200 ORTHO05D009713 1.6e-11 72.0 50 68.0
Cpa.g.sc63.22 Carica papaya HOM05D001200 ORTHO05D009713 2.7e-11 71.2 55 65.5
Os09g0485201 Oryza sativa ssp. japonica HOM05D001200 ORTHO05D009713 2.7e-11 71.2 55 65.5
Medtr4g050960 Medicago truncatula HOM05D001200 ORTHO05D009713 6.1e-11 70.1 55 65.5
Hund27630 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.5e-09 65.5 54 61.1
Hund28597 Selenicereus undatus HOM05D001200 ORTHO05D009713 1.5e-09 65.5 54 61.1
Gohir.A09G017925 Gossypium hirsutum HOM05D001200 ORTHO05D009713 3.3e-09 64.3 45 66.7
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 3.3e-09 64.3 54 61.1
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 3.3e-09 64.3 54 61.1
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 5.7e-09 63.5 47 61.7
Medtr4g026420 Medicago truncatula HOM05D001200 ORTHO05D009713 7.4e-09 63.2 38 76.3
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 1.3e-08 62.4 26 100.0
Hund27883 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.8e-08 60.5 49 61.2
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.8e-08 60.5 49 61.2
Hund28851 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.8e-08 60.5 49 61.2
Hund29433 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.8e-08 60.5 49 61.2
Hund30513 Selenicereus undatus HOM05D001200 ORTHO05D002731 4.8e-08 60.5 49 61.2
Hund30643 Selenicereus undatus HOM05D001200 ORTHO05D009713 4.8e-08 60.5 48 62.5
Aa31LG10G9900 Aethionema arabicum HOM05D000002 ORTHO05D000001 1.8e-07 58.5 31 80.6
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.8e-07 58.5 24 100.0
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.8e-07 58.5 24 100.0
CsaV3_6G032290 Cucumis sativus L. HOM05D001200 ORTHO05D002731 2.4e-07 58.2 32 78.1
Nn1g08635 Nelumbo nucifera HOM05D001200 ORTHO05D009713 9.0e-07 56.2 53 52.8
HanXRQChr02g0038701 Helianthus annuus HOM05D001200 ORTHO05D009713 5.9e-06 53.5 43 60.5


User provided reference genes

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