Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 9.7e-203 709.9 356 100.0
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 8.0e-189 663.7 350 93.7
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 8.3e-178 627.1 350 90.3
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 6.6e-167 590.9 350 80.9
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.2e-165 586.6 350 78.9
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 6.8e-164 580.9 349 77.7
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.1e-161 573.5 339 80.8
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 3.2e-161 572.0 350 77.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.1e-161 570.9 350 78.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 1.0e-159 567.0 350 78.0
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 3.0e-159 565.5 349 76.8
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 3.9e-159 565.1 349 78.2
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-158 563.5 350 76.0
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 5.6e-158 561.2 350 75.7
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 5.6e-158 561.2 350 75.4
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 7.3e-158 560.8 349 75.1
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 7.3e-158 560.8 350 75.1
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 7.3e-158 560.8 350 79.1
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 9.6e-158 560.5 350 76.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 1.6e-157 559.7 337 79.5
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.6e-157 559.7 350 75.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 2.1e-157 559.3 350 74.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 2.1e-157 559.3 359 74.4
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.8e-157 558.9 350 74.6
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 2.8e-157 558.9 350 78.9
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 2.8e-157 558.9 350 78.9
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 4.7e-157 558.1 349 75.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 4.7e-157 558.1 349 75.9
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 6.2e-157 557.8 350 75.4
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.8e-156 556.2 349 75.6
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.8e-156 556.2 350 74.3
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 6.8e-156 554.3 351 74.6
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 1.2e-155 553.5 350 76.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 2.0e-155 552.7 350 74.6
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 2.0e-155 552.7 350 74.6
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 5.8e-155 551.2 350 74.6
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 9.9e-155 550.4 353 74.8
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 9.9e-155 550.4 350 74.3
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.2e-154 549.3 350 73.7
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 2.9e-154 548.9 350 73.7
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 4.9e-154 548.1 349 76.5
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 8.4e-154 547.4 350 73.7
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.1e-153 547.0 349 76.2
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.1e-153 547.0 350 73.7
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 1.4e-153 546.6 349 73.1
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 4.2e-153 545.0 353 74.5
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 5.4e-153 544.7 349 73.6
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 7.1e-153 544.3 349 76.2
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 7.1e-153 544.3 350 72.9
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-152 543.5 349 73.1
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.2e-152 543.5 349 73.1
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.6e-152 543.1 350 74.0
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.6e-152 543.1 339 74.9
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 3.5e-152 542.0 374 71.1
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 7.8e-152 540.8 349 72.8
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.3e-151 540.0 349 71.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.7e-151 539.7 349 75.9
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.3e-151 539.3 352 73.3
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.0e-151 538.9 350 72.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.9e-151 538.5 349 72.8
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 8.7e-151 537.3 349 72.2
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.5e-150 536.6 349 71.6
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 2.5e-150 535.8 350 72.6
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 2.5e-150 535.8 350 72.6
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 3.3e-150 535.4 349 70.5
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 5.6e-150 534.6 349 75.1
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.3e-149 533.5 347 73.8
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.6e-149 533.1 349 71.6
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 2.1e-149 532.7 339 75.2
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 8.1e-149 530.8 349 70.2
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.1e-148 530.4 350 72.0
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.4e-148 529.3 319 79.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.1e-148 528.9 350 72.0
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 3.1e-148 528.9 349 70.2
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 5.3e-148 528.1 345 71.3
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.3e-148 528.1 350 76.6
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.3e-148 528.1 350 72.0
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 5.3e-148 528.1 350 72.0
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.5e-147 526.6 338 71.6
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.5e-147 526.6 349 69.6
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 2.0e-147 526.2 350 71.7
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 4.4e-147 525.0 337 71.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.3e-146 523.5 349 69.3
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.7e-146 523.1 337 75.1
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 8.4e-146 520.8 349 69.6
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 3.5e-144 515.4 400 65.2
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.3e-143 513.5 338 73.7
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 3.0e-143 512.3 319 76.2
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.1e-142 510.4 350 69.1
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.3e-142 507.7 346 74.3
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.6e-141 506.5 408 62.0
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 9.0e-140 500.7 322 77.0
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.8e-139 498.0 358 67.6
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 2.5e-134 482.6 318 74.8
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 3.7e-133 478.8 318 69.5
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.4e-132 476.1 291 75.6
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 2.6e-131 472.6 350 63.1
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 4.5e-131 471.9 295 75.3
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 1.3e-130 470.3 291 75.3
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 1.3e-130 470.3 291 75.3
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 6.5e-130 468.0 338 64.5
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 5.1e-127 458.4 296 77.7
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 3.3e-126 455.7 350 61.1
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.2e-120 437.2 350 59.1
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.6e-120 436.8 395 57.2
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 4.6e-120 435.3 301 69.1
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 9.7e-118 427.6 322 64.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.2e-112 410.6 269 70.3
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 6.1e-112 408.3 255 73.7
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 9.1e-108 394.4 351 58.7
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 6.1e-104 381.7 270 71.5
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 5.1e-103 378.6 223 79.4
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-101 373.6 201 87.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 2.7e-91 339.7 186 84.4
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 9.1e-84 314.7 357 45.9
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.8e-79 300.4 355 43.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.3e-74 284.3 229 57.6
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.1e-73 281.2 203 66.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-73 281.2 158 79.1
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 8.0e-72 275.0 347 41.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.5e-70 268.5 212 63.2
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 7.0e-68 261.9 216 61.1
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 7.8e-59 231.9 181 64.6
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.1e-48 197.2 132 67.4
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 9.9e-46 188.3 108 78.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 6.4e-45 185.7 368 29.1
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 2.3e-42 177.2 87 92.0
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.7e-37 161.0 125 63.2
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 4.6e-27 126.3 129 51.2
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.7e-26 122.1 82 64.6
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.1e-25 121.7 72 70.8
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 4.3e-25 119.8 315 27.9
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 2.4e-23 114.0 118 51.7
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 9.9e-22 108.6 69 71.0
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 2.9e-21 107.1 76 69.7
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.9e-21 106.3 92 56.5
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 3.3e-17 93.6 214 31.8
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.2e-14 85.1 44 84.1
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.0e-14 84.3 54 75.9
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.2e-11 75.1 60 56.7
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.2e-11 75.1 144 36.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.5e-11 73.6 60 56.7
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 4.3e-09 66.6 358 22.3
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 5.7e-09 66.2 42 66.7
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 9.6e-09 65.5 96 37.5
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.1e-08 64.3 32 81.2
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.7e-08 63.5 72 45.8
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 6.9e-07 59.3 46 58.7
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 2.6e-06 57.4 41 58.5


User provided reference genes

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