Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0423141 Helianthus annuus HOM05D003160 ORTHO05D005967 3.3e-90 335.1 182 100.0
Lsat_1_v5_gn_6_101941 Lactuca sativa HOM05D003160 ORTHO05D005967 3.7e-65 251.9 181 76.8
HanXRQChr10g0278581 Helianthus annuus HOM05D003160 ORTHO05D005967 3.8e-62 241.9 186 73.7
Lsat_1_v5_gn_1_4801 Lactuca sativa HOM05D003160 ORTHO05D005967 1.3e-57 226.9 179 69.8
HanXRQChr02g0043721 Helianthus annuus HOM05D003160 ORTHO05D005967 1.0e-54 217.2 179 67.0
CSS0043683 Camellia sinensis var. sinensis HOM05D003160 ORTHO05D005967 8.0e-52 207.6 181 64.6
Hma1.2p1_0276F.1_g111290 Hydrangea macrophylla HOM05D003160 ORTHO05D005967 2.9e-49 199.1 178 62.9
Nitab4.5_0000425g0240 Nicotiana tabacum HOM05D003160 ORTHO05D005967 8.3e-49 197.6 179 62.0
Nitab4.5_0006745g0030 Nicotiana tabacum HOM05D003160 ORTHO05D005967 1.9e-48 196.4 179 62.0
Dinv44718 Davidia involucrata HOM05D003160 ORTHO05D005967 7.0e-48 194.5 181 58.6
Dinv13072 Davidia involucrata HOM05D003160 ORTHO05D005967 6.0e-47 191.4 181 59.1
CDE02G4562 Ceratophyllum demersum HOM05D003160 ORTHO05D005967 2.3e-46 189.5 174 58.6
MBI05_g36578_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D005967 1.9e-45 186.4 184 58.7
PGSC0003DMG400016959 Solanum tuberosum HOM05D003160 ORTHO05D005967 1.9e-45 186.4 181 60.2
Sopen12g029510 Solanum pennellii HOM05D003160 ORTHO05D005967 3.3e-45 185.7 181 59.7
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 4.3e-45 185.3 181 57.5
Peaxi162Scf00160g01617 Petunia axillaris HOM05D003160 ORTHO05D005967 5.6e-45 184.9 182 57.7
Aqoxy6G00501 Aquilegia oxysepala HOM05D003160 ORTHO05D005967 7.3e-45 184.5 179 58.1
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 7.3e-45 184.5 178 57.9
Solyc12g056830.1 Solanum lycopersicum HOM05D003160 ORTHO05D005967 1.2e-44 183.7 181 59.1
Potri.019G087300 Populus trichocarpa HOM05D003160 ORTHO05D005967 8.1e-44 181.0 179 57.5
Eucgr.F04149 Eucalyptus grandis HOM05D003160 ORTHO05D005967 3.1e-43 179.1 181 59.1
HanXRQChr01g0001181 Helianthus annuus HOM05D003160 ORTHO05D005967 4.0e-43 178.7 179 62.0
MSTRG.22135 Avicennia marina HOM05D003160 ORTHO05D005967 5.2e-43 178.3 177 57.6
Manes.02G188100 Manihot esculenta HOM05D003160 ORTHO05D005967 8.9e-43 177.6 178 56.7
Potri.013G117000 Populus trichocarpa HOM05D003160 ORTHO05D005967 1.2e-42 177.2 178 58.4
DCAR_017152 Daucus carota HOM05D003160 ORTHO05D005967 2.6e-42 176.0 176 60.2
COL.COLO4_17389 Corchorus olitorius HOM05D003160 ORTHO05D005967 7.5e-42 174.5 163 60.7
TAR625G0523 Trochodendron aralioides HOM05D003160 ORTHO05D005967 7.5e-42 174.5 177 57.1
MD10G1043200 Malus domestica HOM05D003160 ORTHO05D005967 9.8e-42 174.1 179 55.9
Cc10_g06080 Coffea canephora HOM05D003160 ORTHO05D005967 1.3e-41 173.7 176 55.7
DCAR_013172 Daucus carota HOM05D003160 ORTHO05D005967 1.3e-41 173.7 176 58.5
Lalb_Chr07g0183411 Lupinus albus HOM05D003160 ORTHO05D005967 1.3e-41 173.7 177 55.4
Lj4A710G52 Lonicera japonica HOM05D003160 ORTHO05D005967 1.7e-41 173.3 181 55.2
MD17G1003000 Malus domestica HOM05D003160 ORTHO05D005967 1.7e-41 173.3 179 55.3
Sed0000690 Sechium edule HOM05D003160 ORTHO05D005967 2.9e-41 172.6 178 55.6
CAN.G47.5 Capsicum annuum HOM05D003160 ORTHO05D005967 3.7e-41 172.2 148 62.2
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 3.7e-41 172.2 178 56.7
Gorai.002G037600 Gossypium raimondii HOM05D003160 ORTHO05D005967 3.7e-41 172.2 163 60.7
Cpa.g.sc66.121 Carica papaya HOM05D003160 ORTHO05D005967 4.9e-41 171.8 177 56.5
Gohir.D01G028200 Gossypium hirsutum HOM05D003160 ORTHO05D005967 4.9e-41 171.8 163 60.7
MELO3C025005.2 Cucumis melo HOM05D003160 ORTHO05D005967 6.4e-41 171.4 178 55.6
EL10Ac6g13555 Beta vulgaris HOM05D003160 ORTHO05D005967 8.3e-41 171.0 169 55.0
Cfa018797 Carpinus fangiana HOM05D003160 ORTHO05D005967 8.3e-41 171.0 174 56.3
PGR102G2401 Punica granatum HOM05D003160 ORTHO05D005967 8.3e-41 171.0 179 56.4
Prupe.8G048900 Prunus persica HOM05D003160 ORTHO05D005967 1.1e-40 170.6 182 53.8
Lj4g0003489 Lotus japonicus HOM05D003160 ORTHO05D005967 1.4e-40 170.2 162 60.5
RcHm_v2.0_Chr6g0272941 Rosa chinensis HOM05D003160 ORTHO05D005967 1.4e-40 170.2 150 60.7
Sc04g0010380 Simmondsia chinensis HOM05D003160 ORTHO05D005967 1.4e-40 170.2 179 54.7
Haze_07136 Corylus avellana HOM05D003160 ORTHO05D005967 1.9e-40 169.9 174 55.7
CsaV3_6G002740 Cucumis sativus L. HOM05D003160 ORTHO05D005967 1.9e-40 169.9 178 54.5
Gohir.A01G040600 Gossypium hirsutum HOM05D003160 ORTHO05D005967 1.9e-40 169.9 163 60.1
Ah.02g131050 Amaranthus hybridus HOM05D003160 ORTHO05D005967 3.2e-40 169.1 184 52.2
MSTRG.24477 Avicennia marina HOM05D003160 ORTHO05D005967 3.2e-40 169.1 177 54.8
Glyma.05G048000 Glycine max HOM05D003160 ORTHO05D005967 3.2e-40 169.1 178 55.1
CiPaw.11G007300 Carya illinoinensis HOM05D003160 ORTHO05D005967 5.4e-40 168.3 175 54.3
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 5.4e-40 168.3 164 56.1
Sabra19G0097900 Salix brachista HOM05D003160 ORTHO05D005967 7.1e-40 167.9 179 53.6
Sabra19G0101400 Salix brachista HOM05D003160 ORTHO05D005967 7.1e-40 167.9 179 53.6
Actinidia33169 Actinidia chinensis HOM05D003160 ORTHO05D005967 9.2e-40 167.5 186 53.8
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 9.2e-40 167.5 165 57.6
Migut.C00219 Erythranthe guttata HOM05D003160 ORTHO05D005967 1.2e-39 167.2 178 53.9
PSO541G2449 Papaver somniferum HOM05D003160 ORTHO05D005967 1.2e-39 167.2 176 53.4
Rhsim07G0198600 Rhododendron simsii HOM05D003160 ORTHO05D005967 1.2e-39 167.2 178 53.4
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 1.2e-39 167.2 155 59.4
PSO675G8510 Papaver somniferum HOM05D003160 ORTHO05D005967 6.0e-39 164.9 176 52.3
Duzib213G0606 Durio zibethinus HOM05D003160 ORTHO05D005967 1.0e-38 164.1 146 61.0
FAN27G2017 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.0e-38 164.1 146 60.3
Actinidia29568 Actinidia chinensis HOM05D003160 ORTHO05D005967 1.3e-38 163.7 182 54.4
Ca_26100_v3 Cicer arietinum L. HOM05D003160 ORTHO05D005967 1.7e-38 163.3 161 57.8
FvH4_2g12490 Fragaria vesca HOM05D003160 ORTHO05D005967 1.7e-38 163.3 145 60.7
FAN15G0653 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.7e-38 163.3 145 60.7
FAN24G0582 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.7e-38 163.3 145 60.7
CARHR260570 Cardamine hirsuta HOM05D003160 ORTHO05D005967 3.0e-38 162.5 166 55.4
THA.LOC104806778 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 3.0e-38 162.5 154 57.8
Aa31LG9G14960 Aethionema arabicum HOM05D003160 ORTHO05D005967 3.9e-38 162.2 153 58.8
ATR0605G225 Amborella trichopoda HOM05D003160 ORTHO05D005967 5.1e-38 161.8 161 56.5
Thecc.07G148800 Theobroma cacao HOM05D003160 ORTHO05D005967 8.6e-38 161.0 163 57.7
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 8.6e-38 161.0 164 54.9
SGA_v2.0_scaffold315G48377 Striga asiatica HOM05D003160 ORTHO05D005967 1.1e-37 160.6 176 54.0
A03p28680 Brassica napus HOM05D003160 ORTHO05D005967 3.3e-37 159.1 154 57.1
BraA03t12067Z Brassica rapa HOM05D003160 ORTHO05D005967 3.3e-37 159.1 154 57.1
CANSAT25G2288 Cannabis sativa HOM05D003160 ORTHO05D005967 3.3e-37 159.1 179 54.2
BcaC01g04706 Brassica carinata HOM05D003160 ORTHO05D005967 5.6e-37 158.3 154 57.1
C03p34700 Brassica napus HOM05D003160 ORTHO05D005967 5.6e-37 158.3 154 57.1
BolC3t15780H Brassica oleracea HOM05D003160 ORTHO05D005967 5.6e-37 158.3 154 57.1
QL10p002938 Quercus lobata HOM05D003160 ORTHO05D005967 7.3e-37 157.9 138 59.4
TPR.G19210 Trifolium pratense HOM05D003160 ORTHO05D005967 7.3e-37 157.9 153 57.5
BcaB01g02780 Brassica carinata HOM05D003160 ORTHO05D005967 9.5e-37 157.5 154 57.1
A09p29470 Brassica napus HOM05D003160 ORTHO05D005967 1.2e-36 157.1 176 51.7
BraA09t38512Z Brassica rapa HOM05D003160 ORTHO05D005967 1.2e-36 157.1 176 51.7
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 1.2e-36 157.1 172 53.5
AL6G43270 Arabidopsis lyrata HOM05D003160 ORTHO05D005967 1.6e-36 156.8 152 56.6
AT4G09650 Arabidopsis thaliana HOM05D003160 ORTHO05D005967 1.6e-36 156.8 153 56.2
Thhalv10028838m.g Eutrema salsugineum HOM05D003160 ORTHO05D005967 1.6e-36 156.8 153 57.5
Sp6g07950 Schrenkiella parvula HOM05D003160 ORTHO05D005967 1.6e-36 156.8 153 57.5
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 3.6e-36 155.6 154 55.8
CiPaw.12G043000 Carya illinoinensis HOM05D003160 ORTHO05D005967 4.7e-36 155.2 138 59.4
unitig_37.g13119 Utricularia gibba HOM05D003160 ORTHO05D005967 4.7e-36 155.2 178 52.2
Carub.0006s2810 Capsella rubella HOM05D003160 ORTHO05D005967 6.2e-36 154.8 153 55.6
Sabra13G0099100 Salix brachista HOM05D003160 ORTHO05D005967 6.2e-36 154.8 137 62.0
AUR62005671 Chenopodium quinoa HOM05D003160 ORTHO05D005967 1.1e-35 154.1 184 47.8
C09p37610 Brassica napus HOM05D003160 ORTHO05D005967 1.4e-35 153.7 176 50.6
BolC9t56592H Brassica oleracea HOM05D003160 ORTHO05D005967 1.4e-35 153.7 176 50.6
BcaC04g20948 Brassica carinata HOM05D003160 ORTHO05D005967 1.8e-35 153.3 176 50.6
AUR62028884 Chenopodium quinoa HOM05D003160 ORTHO05D005967 1.8e-35 153.3 184 47.8
Medtr4g103330 Medicago truncatula HOM05D003160 ORTHO05D005967 1.8e-35 153.3 164 55.5
SalBow7G2604 Salvia bowleyana HOM05D003160 ORTHO05D005967 1.8e-35 153.3 145 55.9
Ciclev10002351m.g Citrus clementina HOM05D003160 ORTHO05D005967 4.0e-35 152.1 159 54.7
Atru.chr13.1881 Acer truncatum HOM05D003160 ORTHO05D005967 5.2e-35 151.8 164 51.8
HPP92_004308 Vanilla planifolia HOM05D003160 ORTHO05D005967 1.2e-34 150.6 183 50.3
Hund25486 Selenicereus undatus HOM05D003160 ORTHO05D005967 2.2e-33 146.4 168 48.8
A07p14220 Brassica napus HOM05D003160 ORTHO05D005967 2.9e-33 146.0 156 53.8
BraA07t29180Z Brassica rapa HOM05D003160 ORTHO05D005967 2.9e-33 146.0 156 53.8
BcaC06g34989 Brassica carinata HOM05D003160 ORTHO05D005967 3.8e-33 145.6 156 53.2
C07p20940 Brassica napus HOM05D003160 ORTHO05D005967 4.9e-33 145.2 156 53.2
BolC7t42626H Brassica oleracea HOM05D003160 ORTHO05D005967 4.9e-33 145.2 156 53.2
Aa31LG7G6640 Aethionema arabicum HOM05D003160 ORTHO05D005967 6.4e-33 144.8 155 54.8
TWI34G0437 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 1.1e-32 144.1 165 53.9
Nn2g14435 Nelumbo nucifera HOM05D003160 ORTHO05D005967 1.9e-32 143.3 181 49.7
Psat4g066200 Pisum sativum HOM05D006563 ORTHO05D008154 9.2e-32 141.0 138 55.8
BcaB03g14186 Brassica carinata HOM05D003160 ORTHO05D005967 3.0e-30 136.0 146 54.1
SEGI_07127 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.3e-29 131.3 145 51.7
SEGI_11516 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.3e-29 131.3 145 51.7
Lj4P109T42 Lonicera japonica HOM05D003160 ORTHO05D005967 9.6e-29 131.0 116 56.0
GSVIVG01001595001 Vitis vinifera HOM05D003160 ORTHO05D005967 2.9e-25 119.4 141 47.5
TWI34G1175 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 3.8e-25 119.0 100 61.0
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.1e-24 117.5 143 41.3
Pp3c24_12520 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.2e-23 114.0 185 37.8
Pp3c23_6060 Physcomitrium patens HOM05D003160 ORTHO05D005967 3.9e-22 109.0 195 34.9
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 5.6e-21 105.1 145 37.9
AagrBONN_evm.TU.Sc2ySwM_362.1478 Anthoceros agrestis HOM05D003160 ORTHO05D005967 2.1e-20 103.2 144 40.3
Mapoly0006s0050 Marchantia polymorpha HOM05D003160 ORTHO05D005967 2.1e-20 103.2 144 42.4
ECA246G5055 Erigeron canadensis HOM05D003160 ORTHO05D005967 3.6e-20 102.4 183 43.7
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 4.8e-20 102.1 73 68.5
Mapoly0173s0013 Marchantia polymorpha HOM05D003160 ORTHO05D005967 2.9e-17 92.8 174 34.5
FAN26G1927 Fragaria x ananassa HOM05D003160 ORTHO05D005967 3.8e-17 92.4 62 77.4
Cre11.g467569 Chlamydomonas reinhardtii HOM05D003160 ORTHO05D005967 1.9e-16 90.1 139 40.3
SMO013G0019 Selaginella moellendorffii HOM05D003160 ORTHO05D005967 2.4e-16 89.7 138 36.2
PRCOL_00001524 Prasinoderma coloniale HOM05D003160 ORTHO05D005967 1.3e-14 84.0 130 38.5
Nn6g35751 Nelumbo nucifera HOM05D003160 ORTHO05D005967 1.8e-14 83.6 62 71.0
Thecc.01G337400 Theobroma cacao HOM05D003160 ORTHO05D010088 1.5e-13 80.5 166 31.3
CANSAT56G1121 Cannabis sativa HOM05D003160 ORTHO05D010088 2.5e-13 79.7 177 27.7
ClCG05G000620 Citrullus lanatus HOM05D001628 ORTHO05D001568 3.3e-13 79.3 141 32.6
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 3.3e-13 79.3 136 34.6
QL08p046209 Quercus lobata HOM05D003160 ORTHO05D010088 4.3e-13 79.0 141 31.2
QL08p046215 Quercus lobata HOM05D003160 ORTHO05D010088 4.3e-13 79.0 141 31.2
QL08p046202 Quercus lobata HOM05D003160 ORTHO05D010088 5.6e-13 78.6 141 31.2
Duzib138G0284 Durio zibethinus HOM05D003160 ORTHO05D010088 7.4e-13 78.2 141 32.6
Atru.chr5.726 Acer truncatum HOM05D003160 ORTHO05D010088 9.6e-13 77.8 141 31.2
CsaV3_3G007840 Cucumis sativus L. HOM05D000126 ORTHO05D003017 9.6e-13 77.8 141 34.0
PGSC0003DMG400007007 Solanum tuberosum HOM05D003160 ORTHO05D010088 1.6e-12 77.0 137 33.6
CANSAT56G3603 Cannabis sativa HOM05D003160 ORTHO05D010088 4.8e-12 75.5 135 30.4
CAN.G360.9 Capsicum annuum HOM05D003160 ORTHO05D010088 4.8e-12 75.5 137 32.1
Ciclev10021230m.g Citrus clementina HOM05D003160 ORTHO05D010088 4.8e-12 75.5 163 30.7
MELO3C006001.2 Cucumis melo HOM05D003160 ORTHO05D010088 4.8e-12 75.5 139 32.4
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 8.1e-12 74.7 145 31.0
Nitab4.5_0003865g0070 Nicotiana tabacum HOM05D003160 ORTHO05D010088 1.1e-11 74.3 139 33.8
Aqoxy7G00032 Aquilegia oxysepala HOM05D003160 ORTHO05D010088 1.4e-11 73.9 142 31.7
CBR_g87784 Chara braunii HOM05D003160 ORTHO05D005967 1.8e-11 73.6 157 31.8
Manes.05G019500 Manihot esculenta HOM05D003160 ORTHO05D010088 5.3e-11 72.0 156 30.8
TWI59G0107 Tripterygium wilfordii HOM05D003160 ORTHO05D010088 5.3e-11 72.0 142 33.1
Solyc05g050500.1 Solanum lycopersicum HOM05D003160 ORTHO05D010088 6.9e-11 71.6 137 32.1
Nn1g00361 Nelumbo nucifera HOM05D000716 ORTHO05D004822 1.5e-10 70.5 137 32.1
Sopen05g028910 Solanum pennellii HOM05D003160 ORTHO05D010088 2.6e-10 69.7 137 31.4
Gohir.D12G117600 Gossypium hirsutum HOM05D003160 ORTHO05D010088 3.4e-10 69.3 149 29.5
Os02g0750100 Oryza sativa ssp. japonica HOM05D003160 ORTHO05D005967 4.5e-10 68.9 55 69.1
Sabra14G0075100 Salix brachista HOM05D003160 ORTHO05D010088 4.5e-10 68.9 143 30.1
TAR374G0774 Trochodendron aralioides HOM05D003160 ORTHO05D010088 9.9e-10 67.8 138 31.2
Gohir.A12G114100 Gossypium hirsutum HOM05D003160 ORTHO05D010088 1.7e-09 67.0 149 28.9
Potri.014G102100 Populus trichocarpa HOM05D003160 ORTHO05D010088 1.7e-09 67.0 171 28.7
Gorai.008G127400 Gossypium raimondii HOM05D003160 ORTHO05D010088 2.2e-09 66.6 149 28.2
PSO384G0028 Papaver somniferum HOM05D003160 ORTHO05D010088 1.1e-08 64.3 142 28.9
Sed0027763 Sechium edule HOM05D003160 ORTHO05D010088 1.1e-08 64.3 140 28.6
Lj1g0008335 Lotus japonicus HOM05D003160 ORTHO05D010088 1.9e-08 63.5 142 28.9
MBI12_g03929_MAGBIO Magnolia biondii HOM05D002361 ORTHO05D002843 2.4e-08 63.2 143 29.4
Lalb_Chr15g0076361 Lupinus albus HOM05D003160 ORTHO05D010088 5.5e-08 62.0 134 29.9
Glyma.19G257900 Glycine max HOM05D003160 ORTHO05D010088 2.1e-07 60.1 141 30.5
MBI18_g28945_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D023424 3.5e-07 59.3 126 30.2
Sed0027822 Sechium edule HOM05D003160 ORTHO05D010088 6.0e-07 58.5 94 34.0
Phvul.006G115400 Phaseolus vulgaris HOM05D003160 ORTHO05D010088 7.9e-07 58.2 141 30.5
Sed0001592 Sechium edule HOM05D003160 ORTHO05D010088 7.9e-07 58.2 94 33.0
Medtr7g117900 Medicago truncatula HOM05D003160 ORTHO05D010088 1.3e-06 57.4 141 28.4
Nitab4.5_0000258g0330 Nicotiana tabacum HOM05D003160 ORTHO05D010088 1.8e-06 57.0 75 37.3
Ca_09526_v3 Cicer arietinum L. HOM05D003160 ORTHO05D010088 3.0e-06 56.2 145 26.9
Dinv34236 Davidia involucrata HOM05D003160 ORTHO05D010088 6.7e-06 55.1 109 31.2


User provided reference genes

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