Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0410581 Helianthus annuus HOM05D003214 ORTHO05D013834 1.1e-84 316.6 158 100.0
HanXRQChr09g0248871 Helianthus annuus HOM05D003214 ORTHO05D013834 1.4e-68 263.1 140 93.6
ECA196G0013 Erigeron canadensis HOM05D003214 ORTHO05D004330 7.9e-64 247.3 140 85.0
Cfa005285 Carpinus fangiana HOM05D003214 ORTHO05D004330 7.7e-59 230.7 139 78.4
Haze_02105 Corylus avellana HOM05D003214 ORTHO05D004330 2.2e-58 229.2 140 77.1
CSS0041068 Camellia sinensis var. sinensis HOM05D003214 ORTHO05D004330 6.5e-58 227.6 138 77.5
QL01p046809 Quercus lobata HOM05D003214 ORTHO05D004330 8.5e-58 227.3 139 77.0
MSTRG.12021 Avicennia marina HOM05D003214 ORTHO05D004330 2.5e-57 225.7 140 75.7
CiPaw.05G085300 Carya illinoinensis HOM05D003214 ORTHO05D004330 3.2e-57 225.3 139 76.3
Glyma.20G106300 Glycine max HOM05D003214 ORTHO05D004330 3.2e-57 225.3 139 76.3
THA.LOC104819659 Tarenaya hassleriana HOM05D003214 ORTHO05D004330 4.2e-57 224.9 139 77.7
FAN20G2853 Fragaria x ananassa HOM05D003214 ORTHO05D004330 7.2e-57 224.2 153 73.2
Prupe.8G169000 Prunus persica HOM05D003214 ORTHO05D004330 9.4e-57 223.8 139 77.7
Sed0023751 Sechium edule HOM05D003214 ORTHO05D004330 1.2e-56 223.4 139 76.3
Cc09_g10320 Coffea canephora HOM05D003214 ORTHO05D004330 1.6e-56 223.0 140 77.1
CsaV3_2G016250 Cucumis sativus L. HOM05D003214 ORTHO05D004330 1.6e-56 223.0 139 77.0
FvH4_2g15650 Fragaria vesca HOM05D003214 ORTHO05D004330 3.6e-56 221.9 140 77.1
PGR142G0610 Punica granatum HOM05D003214 ORTHO05D004330 3.6e-56 221.9 139 76.3
CSS0005434 Camellia sinensis var. sinensis HOM05D003214 ORTHO05D004330 4.7e-56 221.5 140 74.3
Nitab4.5_0009111g0010 Nicotiana tabacum HOM05D003214 ORTHO05D004330 6.1e-56 221.1 145 73.1
A03p46190 Brassica napus HOM05D003214 ORTHO05D004330 8.0e-56 220.7 139 75.5
AT2G16950 Arabidopsis thaliana HOM05D003214 ORTHO05D004330 1.8e-55 219.5 139 75.5
CiPaw.06G120100 Carya illinoinensis HOM05D003214 ORTHO05D004330 2.3e-55 219.2 139 74.8
vmacro02292 Vaccinium macrocarpon HOM05D003214 ORTHO05D004330 2.3e-55 219.2 146 73.3
Atru.chr5.3440 Acer truncatum HOM05D003214 ORTHO05D004330 3.0e-55 218.8 139 77.0
Thecc.02G055400 Theobroma cacao HOM05D003214 ORTHO05D004330 3.0e-55 218.8 137 75.9
A07p04130 Brassica napus HOM05D003214 ORTHO05D004330 6.7e-55 217.6 139 74.8
C07p06530 Brassica napus HOM05D003214 ORTHO05D004330 6.7e-55 217.6 139 74.8
BolC7t41074H Brassica oleracea HOM05D003214 ORTHO05D004330 6.7e-55 217.6 139 74.8
BraA07t28204Z Brassica rapa HOM05D003214 ORTHO05D004330 6.7e-55 217.6 139 74.8
Nitab4.5_0000079g0220 Nicotiana tabacum HOM05D003214 ORTHO05D004330 6.7e-55 217.6 145 71.7
BcaB03g16429 Brassica carinata HOM05D003214 ORTHO05D004330 1.1e-54 216.9 139 74.8
Sc15g0002120 Simmondsia chinensis HOM05D003214 ORTHO05D004330 2.0e-54 216.1 139 74.8
GSVIVG01023974001 Vitis vinifera HOM05D003214 ORTHO05D004330 4.4e-54 214.9 135 77.0
Nn1g08447 Nelumbo nucifera HOM05D003214 ORTHO05D004330 1.3e-53 213.4 137 73.7
A09p11160 Brassica napus HOM05D003214 ORTHO05D004330 1.7e-53 213.0 139 72.7
TWI75G1738 Tripterygium wilfordii HOM05D003214 ORTHO05D004330 2.2e-53 212.6 137 73.7
Peaxi162Scf00362g00439 Petunia axillaris HOM05D003214 ORTHO05D004330 2.8e-53 212.2 165 65.5
HPP92_006849 Vanilla planifolia HOM05D003214 ORTHO05D004330 8.2e-53 210.7 138 73.9
HPP92_006865 Vanilla planifolia HOM05D003214 ORTHO05D004330 8.2e-53 210.7 138 73.9
PSO675G3496 Papaver somniferum HOM05D003214 ORTHO05D004330 2.4e-52 209.1 139 73.4
Sed0004428 Sechium edule HOM05D003214 ORTHO05D004330 3.1e-52 208.8 145 71.0
BolC9t54210H Brassica oleracea HOM05D003214 ORTHO05D004330 5.3e-52 208.0 145 70.3
Potri.004G177700 Populus trichocarpa HOM05D003214 ORTHO05D004330 9.1e-52 207.2 137 73.0
Potri.009G138200 Populus trichocarpa HOM05D003214 ORTHO05D004330 9.1e-52 207.2 137 72.3
Duzib093G0144 Durio zibethinus HOM05D003214 ORTHO05D004330 1.6e-51 206.5 139 72.7
Nn5g27766 Nelumbo nucifera HOM05D003214 ORTHO05D004330 2.0e-51 206.1 137 73.7
Ciclev10027778m.g Citrus clementina HOM05D003214 ORTHO05D004330 3.5e-51 205.3 137 71.5
TAR376G0505 Trochodendron aralioides HOM05D003214 ORTHO05D004330 4.5e-51 204.9 145 69.0
BraA09t36758Z Brassica rapa HOM05D003214 ORTHO05D004330 5.9e-51 204.5 150 67.3
Mapoly0057s0097 Marchantia polymorpha HOM05D003214 ORTHO05D004330 4.2e-49 198.4 139 67.6
Atru.chr13.222 Acer truncatum HOM05D003214 ORTHO05D004330 5.5e-49 198.0 137 68.6
Sabra04G0119600 Salix brachista HOM05D003214 ORTHO05D004330 5.5e-49 198.0 155 64.5
Pp3c6_18200 Physcomitrium patens HOM05D003214 ORTHO05D004330 1.6e-48 196.4 139 66.9
AagrBONN_evm.TU.Sc2ySwM_228.2863 Anthoceros agrestis HOM05D003214 ORTHO05D004330 2.1e-48 196.1 139 67.6
SalBow1G8529 Salvia bowleyana HOM05D003214 ORTHO05D004330 3.6e-48 195.3 182 56.6
Actinidia20525 Actinidia chinensis HOM05D003214 ORTHO05D004330 5.2e-47 191.4 139 66.2
ClCG02G012090 Citrullus lanatus HOM05D003214 ORTHO05D004330 6.8e-47 191.0 139 68.3
Pp3c27_5090 Physcomitrium patens HOM05D003214 ORTHO05D004330 1.2e-46 190.3 139 65.5
Ca_03296_v3 Cicer arietinum L. HOM05D003214 ORTHO05D004330 7.5e-46 187.6 139 64.0
Dinv41918 Davidia involucrata HOM05D003214 ORTHO05D004330 1.3e-45 186.8 107 82.2
Glyma.10G283400 Glycine max HOM05D003214 ORTHO05D004330 8.3e-45 184.1 139 64.0
FAN24G0254 Fragaria x ananassa HOM05D003214 ORTHO05D004330 1.1e-44 183.7 140 69.3
PGR031G2444 Punica granatum HOM05D003214 ORTHO05D004330 4.5e-43 178.3 140 61.4
Psat6g232040 Pisum sativum HOM05D003214 ORTHO05D004330 7.7e-43 177.6 139 61.9
BcaC06g36202 Brassica carinata HOM05D003214 ORTHO05D004330 2.2e-42 176.0 139 62.6
TAR625G1234 Trochodendron aralioides HOM05D003214 ORTHO05D004330 2.9e-42 175.6 127 68.5
FAN15G1272 Fragaria x ananassa HOM05D003214 ORTHO05D004330 1.1e-41 173.7 140 62.1
CDE08G0902 Ceratophyllum demersum HOM05D003214 ORTHO05D004330 2.5e-41 172.6 140 60.0
Duzib052G0573 Durio zibethinus HOM05D003214 ORTHO05D004330 3.2e-41 172.2 138 61.6
EL10Ac8g18581 Beta vulgaris HOM05D003214 ORTHO05D004330 5.5e-41 171.4 140 60.0
Medtr1g112920 Medicago truncatula HOM05D003214 ORTHO05D004330 5.5e-41 171.4 139 59.7
FAN27G1670 Fragaria x ananassa HOM05D003214 ORTHO05D004330 1.6e-40 169.9 140 61.4
Thecc.08G051200 Theobroma cacao HOM05D003214 ORTHO05D004330 3.6e-40 168.7 139 61.2
CDE06G0864 Ceratophyllum demersum HOM05D003214 ORTHO05D004330 6.1e-40 167.9 140 57.9
Lj5g0003348 Lotus japonicus HOM05D003214 ORTHO05D004330 1.0e-39 167.2 139 59.0
AUR62033441 Chenopodium quinoa HOM05D003214 ORTHO05D004330 1.8e-39 166.4 139 58.3
Sabra09G0107100 Salix brachista HOM05D003214 ORTHO05D004330 3.0e-39 165.6 140 62.9
unitig_21.g20525 Utricularia gibba HOM05D003214 ORTHO05D004330 5.2e-39 164.9 129 64.3
SEGI_16409 Sequoiadendron giganteum HOM05D003214 ORTHO05D004330 2.6e-38 162.5 141 58.2
MD05G1125000 Malus domestica HOM05D003214 ORTHO05D004330 4.4e-38 161.8 139 58.3
MSTRG.13818 Avicennia marina HOM05D003214 ORTHO05D004330 7.5e-38 161.0 140 58.6
MELO3C020836.2 Cucumis melo HOM05D003214 ORTHO05D004330 7.5e-38 161.0 139 58.3
AUR62011064 Chenopodium quinoa HOM05D003214 ORTHO05D004330 2.2e-37 159.5 139 56.1
Cpa.g.sc20.112 Carica papaya HOM05D003214 ORTHO05D004330 2.8e-37 159.1 99 77.8
Gohir.D02G227200 Gossypium hirsutum HOM05D003214 ORTHO05D004330 2.4e-36 156.0 140 53.6
RcHm_v2.0_Chr6g0278851 Rosa chinensis HOM05D003214 ORTHO05D004330 3.1e-36 155.6 143 56.6
GSVIVG01008744001 Vitis vinifera HOM05D003214 ORTHO05D004330 4.1e-36 155.2 138 57.2
COL.COLO4_26089 Corchorus olitorius HOM05D003214 ORTHO05D004330 5.4e-36 154.8 99 75.8
Gorai.005G255100 Gossypium raimondii HOM05D003214 ORTHO05D004330 7.0e-36 154.5 139 53.2
Gohir.A01G170600 Gossypium hirsutum HOM05D003214 ORTHO05D004330 3.5e-35 152.1 137 54.0
Gohir.D01G161600 Gossypium hirsutum HOM05D003214 ORTHO05D004330 3.5e-35 152.1 137 54.0
Gorai.002G200500 Gossypium raimondii HOM05D003214 ORTHO05D004330 3.5e-35 152.1 137 54.0
TWI31G0460 Tripterygium wilfordii HOM05D003214 ORTHO05D004330 4.5e-35 151.8 139 55.4
PSO170G1418 Papaver somniferum HOM05D003214 ORTHO05D004330 1.7e-34 149.8 137 56.2
COL.COLO4_17378 Corchorus olitorius HOM05D003214 ORTHO05D004330 5.6e-33 144.8 138 55.1
Manes.11G097900 Manihot esculenta HOM05D003214 ORTHO05D004330 5.6e-33 144.8 137 54.0
HanXRQChr04g0110121 Helianthus annuus HOM05D003214 ORTHO05D004330 7.3e-33 144.4 140 57.1
HanXRQChr02g0040581 Helianthus annuus HOM05D003214 ORTHO05D004330 2.8e-32 142.5 140 53.6
Os04g0691500 Oryza sativa ssp. japonica HOM05D003214 ORTHO05D004330 2.8e-32 142.5 145 51.7
Manes.05G143000 Manihot esculenta HOM05D003214 ORTHO05D004330 6.1e-32 141.4 140 52.9
Lj5A176G61 Lonicera japonica HOM05D003214 ORTHO05D004330 1.4e-31 140.2 142 51.4
SGA_v2.0_scaffold196G40882 Striga asiatica HOM05D003214 ORTHO05D004330 1.8e-31 139.8 140 51.4
Thhalv10022538m.g Eutrema salsugineum HOM05D003214 ORTHO05D004330 2.3e-31 139.4 139 52.5
Sp3g30230 Schrenkiella parvula HOM05D003214 ORTHO05D004330 5.2e-31 138.3 139 51.8
PSO210G6165 Papaver somniferum HOM05D003214 ORTHO05D004330 2.0e-30 136.3 137 51.8
MCO12G350 Micromonas commoda HOM05D003214 ORTHO05D004330 2.6e-30 136.0 143 49.7
Sopen01g053820 Solanum pennellii HOM05D003214 ORTHO05D004330 3.4e-30 135.6 141 50.4
Lalb_Chr21g0307001 Lupinus albus HOM05D003214 ORTHO05D004330 7.5e-30 134.4 139 48.9
Nitab4.5_0003698g0020 Nicotiana tabacum HOM05D003214 ORTHO05D004330 7.5e-30 134.4 141 51.1
MD10G1127800 Malus domestica HOM05D003214 ORTHO05D004330 9.8e-30 134.0 139 49.6
Peaxi162Scf00078g01329 Petunia axillaris HOM05D003214 ORTHO05D004330 1.7e-29 133.3 140 50.7
Pp3c16_4650 Physcomitrium patens HOM05D003214 ORTHO05D004330 1.7e-29 133.3 139 48.9
Gohir.D06G154450 Gossypium hirsutum HOM05D003214 ORTHO05D013834 2.2e-29 132.9 96 65.6
Eucgr.F03709 Eucalyptus grandis HOM05D003214 ORTHO05D004330 4.9e-29 131.7 139 48.9
THA.LOC104804319 Tarenaya hassleriana HOM05D003214 ORTHO05D004330 4.9e-29 131.7 139 49.6
VMungo0720G0502 Vigna mungo HOM05D003214 ORTHO05D004330 4.9e-29 131.7 139 48.9
Aqoxy5G01104 Aquilegia oxysepala HOM05D003214 ORTHO05D004330 8.3e-29 131.0 138 50.7
Migut.E01296 Erythranthe guttata HOM05D003214 ORTHO05D004330 1.1e-28 130.6 140 48.6
CARHR107250 Cardamine hirsuta HOM05D003214 ORTHO05D004330 1.8e-28 129.8 139 48.9
Gohir.A03G205850 Gossypium hirsutum HOM05D003214 ORTHO05D004330 1.8e-28 129.8 144 47.2
Actinidia18041 Actinidia chinensis HOM05D003214 ORTHO05D004330 2.4e-28 129.4 139 48.2
CAN.G588.99 Capsicum annuum HOM05D003214 ORTHO05D004330 2.4e-28 129.4 140 49.3
Gorai.012G059000 Gossypium raimondii HOM05D003214 ORTHO05D013834 2.4e-28 129.4 96 63.5
Lalb_Chr02g0143501 Lupinus albus HOM05D003214 ORTHO05D004330 3.2e-28 129.0 139 48.2
Gohir.D09G053166 Gossypium hirsutum HOM05D003214 ORTHO05D013834 4.1e-28 128.6 84 70.2
Rhsim11G0193600 Rhododendron simsii HOM05D003214 ORTHO05D004330 4.1e-28 128.6 140 47.9
Solyc01g111780.4 Solanum lycopersicum HOM05D003214 ORTHO05D004330 2.0e-27 126.3 141 47.5
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 2.7e-27 125.9 140 47.9
Nitab4.5_0004867g0010 Nicotiana tabacum HOM05D003214 ORTHO05D004330 2.7e-27 125.9 141 47.5
arahy.Tifrunner.gnm1.ann1.47PMEA Arachis hypogaea HOM05D003214 ORTHO05D004330 3.5e-27 125.6 139 46.8
arahy.Tifrunner.gnm1.ann1.L5LJLM Arachis hypogaea HOM05D003214 ORTHO05D004330 3.5e-27 125.6 139 46.8
DCAR_001345 Daucus carota HOM05D003214 ORTHO05D004330 5.9e-27 124.8 94 68.1
Oeu031591.4 Olea europaea HOM05D003214 ORTHO05D004330 5.9e-27 124.8 155 47.1
Phvul.007G017800 Phaseolus vulgaris HOM05D003214 ORTHO05D004330 1.0e-26 124.0 139 46.0
Aa31LG8G14130 Aethionema arabicum HOM05D003214 ORTHO05D004330 1.7e-26 123.2 139 46.8
Carub.0003s3076 Capsella rubella HOM05D003214 ORTHO05D004330 5.0e-26 121.7 139 46.8
Gohir.A01G002000 Gossypium hirsutum HOM05D003214 ORTHO05D004330 6.6e-26 121.3 137 45.3
TPR.G2434 Trifolium pratense HOM05D003214 ORTHO05D004330 8.6e-26 120.9 139 43.9
CANSAT25G3225 Cannabis sativa HOM05D003214 ORTHO05D004330 2.5e-25 119.4 140 45.7
Gohir.D01G001600 Gossypium hirsutum HOM05D003214 ORTHO05D004330 2.5e-25 119.4 137 44.5
BcaB08g34680 Brassica carinata HOM05D003214 ORTHO05D004330 5.6e-25 118.2 139 46.0
AL3G49700 Arabidopsis lyrata HOM05D003214 ORTHO05D004330 9.5e-25 117.5 139 45.3
BcaC04g23002 Brassica carinata HOM05D003214 ORTHO05D004330 1.2e-24 117.1 139 44.6
C09p13150 Brassica napus HOM05D003214 ORTHO05D004330 1.2e-24 117.1 139 44.6
Gorai.002G002200 Gossypium raimondii HOM05D003214 ORTHO05D004330 1.6e-24 116.7 137 44.5
BcaC01g02966 Brassica carinata HOM05D003214 ORTHO05D004330 2.1e-24 116.3 139 44.6
Dinv14126 Davidia involucrata HOM05D003214 ORTHO05D004330 3.6e-24 115.5 143 46.2
Gohir.D07G180400 Gossypium hirsutum HOM05D003214 ORTHO05D013834 4.7e-24 115.2 80 70.0
Gohir.D05G367000 Gossypium hirsutum HOM05D003214 ORTHO05D013834 6.2e-24 114.8 92 64.1
C03p57710 Brassica napus HOM05D003214 ORTHO05D004330 8.0e-24 114.4 139 43.9
Gohir.D10G169500 Gossypium hirsutum HOM05D003214 ORTHO05D013834 1.0e-23 114.0 92 64.1
Gohir.D03G055000 Gossypium hirsutum HOM05D003214 ORTHO05D013834 1.8e-23 113.2 92 64.1
Gorai.003G112600 Gossypium raimondii HOM05D003214 ORTHO05D013834 1.8e-23 113.2 80 70.0
SMO174G0083 Selaginella moellendorffii HOM05D003214 ORTHO05D004330 2.3e-23 112.8 139 44.6
Gohir.D12G149400 Gossypium hirsutum HOM05D003214 ORTHO05D013834 3.1e-23 112.5 80 68.8
Gorai.008G128700 Gossypium raimondii HOM05D003214 ORTHO05D013834 3.1e-23 112.5 80 70.0
Gohir.D04G121100 Gossypium hirsutum HOM05D003214 ORTHO05D013834 4.0e-23 112.1 101 62.4
Hma1.2p1_0144F.1_g064770 Hydrangea macrophylla HOM05D003214 ORTHO05D004330 1.2e-22 110.5 137 43.1
DCAR_022960 Daucus carota HOM05D003214 ORTHO05D004330 1.5e-22 110.2 140 42.1
PRCOL_00003157 Prasinoderma coloniale HOM05D003214 ORTHO05D004330 1.5e-22 110.2 145 42.8
Gorai.002G122100 Gossypium raimondii HOM05D003214 ORTHO05D013834 2.6e-22 109.4 77 70.1
Pp3c5_4970 Physcomitrium patens HOM05D003214 ORTHO05D004330 2.9e-21 105.9 137 43.1
ATR0665G341 Amborella trichopoda HOM05D003214 ORTHO05D004330 4.9e-21 105.1 138 42.8
Zm00001eb434450 Zea mays HOM05D003214 ORTHO05D004330 1.9e-20 103.2 145 42.1
Cre12.g520550 Chlamydomonas reinhardtii HOM05D003214 ORTHO05D004330 3.2e-20 102.4 140 40.7
Zm00001eb076490 Zea mays HOM05D003214 ORTHO05D004330 3.2e-20 102.4 145 42.1
CBR_g22065 Chara braunii HOM05D003214 ORTHO05D004330 6.0e-19 98.2 137 41.6
FAN20G0010 Fragaria x ananassa HOM05D003214 ORTHO05D001586 1.8e-15 86.7 85 60.0
FAN25G3698 Fragaria x ananassa HOM05D003214 ORTHO05D001586 2.0e-14 83.2 54 75.9
Oeu027804.1 Olea europaea HOM05D003214 ORTHO05D004330 6.4e-13 78.2 54 72.2
PSO210G0009 Papaver somniferum HOM05D003214 ORTHO05D013834 1.2e-11 73.9 56 66.1
Carub.0003s3079 Capsella rubella HOM05D003214 ORTHO05D004330 9.5e-09 64.3 60 53.3
Haze_26729 Corylus avellana HOM05D003214 ORTHO05D004330 4.7e-08 62.0 141 26.2
VMungo1215G1654 Vigna mungo HOM05D001934 ORTHO05D029239 7.6e-06 54.7 30 76.7


User provided reference genes

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