Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 4.6e-39 164.1 82 100.0
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 3.8e-25 117.9 69 87.0
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 3.2e-16 88.2 66 66.7
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 3.2e-16 88.2 79 60.8
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 4.2e-16 87.8 71 63.4
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 5.5e-16 87.4 79 60.8
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 9.3e-16 86.7 71 60.6
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 2.1e-15 85.5 62 66.1
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 2.1e-15 85.5 83 56.6
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.7e-15 85.1 71 57.7
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.7e-15 85.1 71 59.2
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.7e-15 85.1 75 57.3
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.7e-15 85.1 75 57.3
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 3.5e-15 84.7 71 57.7
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 3.5e-15 84.7 67 61.2
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 7.9e-15 83.6 70 61.4
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.0e-14 83.2 62 64.5
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 1.3e-14 82.8 71 62.0
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 1.3e-14 82.8 62 62.9
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 1.8e-14 82.4 68 61.8
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.3e-14 82.0 71 59.2
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.3e-14 82.0 59 67.8
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 2.3e-14 82.0 69 59.4
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 3.9e-14 81.3 71 59.2
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 3.9e-14 81.3 71 59.2
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 3.9e-14 81.3 79 55.7
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 3.9e-14 81.3 71 57.7
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 3.9e-14 81.3 67 58.2
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 5.1e-14 80.9 71 57.7
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 5.1e-14 80.9 71 56.3
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 6.7e-14 80.5 68 58.8
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 6.7e-14 80.5 67 58.2
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 6.7e-14 80.5 69 59.4
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 8.7e-14 80.1 63 63.5
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 1.1e-13 79.7 62 62.9
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.1e-13 79.7 72 58.3
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 1.5e-13 79.3 62 64.5
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 1.5e-13 79.3 62 59.7
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 1.9e-13 79.0 69 55.1
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.9e-13 79.0 62 58.1
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 1.9e-13 79.0 62 61.3
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.9e-13 79.0 62 61.3
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.9e-13 79.0 62 58.1
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.9e-13 79.0 62 58.1
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 1.9e-13 79.0 62 61.3
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 2.5e-13 78.6 62 59.7
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 2.5e-13 78.6 62 59.7
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 2.5e-13 78.6 62 59.7
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 2.5e-13 78.6 62 59.7
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 2.5e-13 78.6 62 59.7
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 2.5e-13 78.6 66 57.6
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 2.5e-13 78.6 62 61.3
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 3.3e-13 78.2 62 59.7
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 3.3e-13 78.2 58 65.5
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 3.3e-13 78.2 62 59.7
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 3.3e-13 78.2 70 58.6
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 3.3e-13 78.2 59 64.4
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 3.3e-13 78.2 62 62.9
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 3.3e-13 78.2 71 54.9
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 3.3e-13 78.2 62 59.7
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 3.3e-13 78.2 70 60.0
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 4.3e-13 77.8 62 61.3
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 4.3e-13 77.8 62 59.7
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 4.3e-13 77.8 66 57.6
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.3e-13 77.8 66 57.6
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 4.3e-13 77.8 61 59.0
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 4.3e-13 77.8 70 62.9
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 4.3e-13 77.8 62 59.7
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 4.3e-13 77.8 71 60.6
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 5.7e-13 77.4 58 65.5
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 5.7e-13 77.4 62 61.3
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 5.7e-13 77.4 62 61.3
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 5.7e-13 77.4 62 59.7
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 5.7e-13 77.4 62 61.3
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 7.4e-13 77.0 62 58.1
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 7.4e-13 77.0 62 56.5
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 7.4e-13 77.0 62 59.7
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 7.4e-13 77.0 62 59.7
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 7.4e-13 77.0 67 56.7
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 9.6e-13 76.6 62 58.1
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 9.6e-13 76.6 61 57.4
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 9.6e-13 76.6 62 54.8
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 9.6e-13 76.6 66 56.1
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 9.6e-13 76.6 66 56.1
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 9.6e-13 76.6 66 56.1
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 9.6e-13 76.6 62 59.7
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 9.6e-13 76.6 69 56.5
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 9.6e-13 76.6 72 58.3
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 1.3e-12 76.3 62 61.3
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 1.3e-12 76.3 66 54.5
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 1.3e-12 76.3 62 61.3
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 1.3e-12 76.3 62 58.1
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 1.3e-12 76.3 61 57.4
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 1.6e-12 75.9 70 54.3
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 1.6e-12 75.9 62 61.3
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.6e-12 75.9 72 56.9
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 1.6e-12 75.9 62 58.1
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 2.1e-12 75.5 62 58.1
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 2.1e-12 75.5 62 58.1
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 2.1e-12 75.5 62 54.8
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 2.1e-12 75.5 61 59.0
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 2.8e-12 75.1 63 57.1
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 2.8e-12 75.1 62 59.7
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 3.7e-12 74.7 62 56.5
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 3.7e-12 74.7 67 53.7
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 3.7e-12 74.7 62 54.8
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 4.8e-12 74.3 62 56.5
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 4.8e-12 74.3 66 57.6
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 4.8e-12 74.3 58 62.1
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 4.8e-12 74.3 81 53.1
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 6.2e-12 73.9 80 51.2
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 6.2e-12 73.9 71 52.1
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 8.2e-12 73.6 66 57.6
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 8.2e-12 73.6 62 58.1
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 1.1e-11 73.2 66 56.1
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 1.4e-11 72.8 62 56.5
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 3.1e-11 71.6 58 60.3
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 4.0e-11 71.2 72 52.8
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 6.9e-11 70.5 72 54.2
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 2.0e-10 68.9 79 49.4
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.0e-10 68.9 80 48.8
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 2.6e-10 68.6 71 50.7
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 7.6e-10 67.0 69 46.4
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 7.6e-10 67.0 69 47.8
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.3e-09 66.2 68 54.4
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 5.5e-08 60.8 47 61.7
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.1e-08 60.5 70 52.9
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.2e-07 59.7 58 55.2
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 4.6e-07 57.8 72 45.8
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.3e-06 56.2 52 50.0
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 8.7e-06 53.5 72 43.1


User provided reference genes

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