Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 1.0e-134 483.4 249 100.0
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 9.9e-85 317.4 258 65.5
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.0e-73 279.3 205 68.8
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 5.1e-73 278.5 210 63.3
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.1e-72 277.3 210 62.9
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.3e-72 275.8 210 62.9
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 5.2e-70 268.5 239 59.4
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 5.8e-69 265.0 173 78.6
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.9e-68 262.7 228 61.0
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 4.2e-67 258.8 209 63.6
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 7.1e-67 258.1 240 57.5
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 2.1e-66 256.5 222 60.4
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 1.0e-65 254.2 251 53.8
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 1.7e-65 253.4 240 56.2
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 2.3e-65 253.1 229 59.4
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 3.9e-65 252.3 220 60.5
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 5.1e-65 251.9 212 59.0
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 8.7e-65 251.1 270 51.5
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 1.5e-64 250.4 219 58.4
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 1.9e-64 250.0 228 56.6
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 1.9e-64 250.0 234 59.4
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 2.5e-64 249.6 246 53.7
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 5.6e-64 248.4 236 54.2
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 7.3e-64 248.1 214 57.0
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 7.3e-64 248.1 208 61.1
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 3.6e-63 245.7 235 54.9
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 6.2e-63 245.0 259 51.0
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 8.1e-63 244.6 207 61.4
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 8.1e-63 244.6 215 60.9
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.1e-62 244.2 245 51.4
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 1.1e-62 244.2 230 56.1
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 1.4e-62 243.8 211 56.4
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 1.4e-62 243.8 231 55.4
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.4e-62 243.0 207 61.4
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 2.4e-62 243.0 241 57.3
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 2.4e-62 243.0 241 57.3
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 3.1e-62 242.7 202 62.9
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 5.3e-62 241.9 242 51.7
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 5.3e-62 241.9 219 58.0
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 1.2e-61 240.7 235 56.2
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 2.0e-61 240.0 245 53.5
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 2.6e-61 239.6 220 56.4
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 5.8e-61 238.4 246 53.7
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.3e-60 237.3 211 56.4
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 1.3e-60 237.3 238 52.9
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.2e-60 236.5 242 50.0
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 2.9e-60 236.1 248 51.2
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 4.9e-60 235.3 221 52.5
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 4.9e-60 235.3 221 52.5
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 4.9e-60 235.3 224 56.2
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 1.1e-59 234.2 246 50.4
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.1e-59 234.2 231 53.7
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.4e-59 233.8 221 53.8
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.9e-59 233.4 255 52.2
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.9e-59 233.4 231 51.9
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 1.6e-58 230.3 206 56.8
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 3.5e-58 229.2 217 53.9
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 4.6e-58 228.8 252 49.2
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 6.0e-58 228.4 247 49.8
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 6.7e-57 224.9 231 50.6
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.9e-56 223.4 235 48.9
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 4.3e-56 222.2 230 52.6
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 1.6e-55 220.3 211 53.6
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 2.1e-55 219.9 228 52.2
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 4.8e-55 218.8 217 51.2
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 4.8e-55 218.8 234 48.7
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 8.1e-55 218.0 228 51.8
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 1.8e-54 216.9 219 52.5
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 2.4e-54 216.5 213 51.6
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 2.4e-54 216.5 213 51.6
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 5.3e-54 215.3 219 49.3
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 9.0e-54 214.5 213 51.6
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 9.0e-54 214.5 217 50.7
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 1.2e-53 214.2 217 50.2
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 1.2e-53 214.2 211 52.1
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 2.0e-53 213.4 218 50.9
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 2.6e-53 213.0 211 52.6
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 9.9e-53 211.1 211 51.7
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 2.2e-52 209.9 218 49.1
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 2.9e-52 209.5 162 64.2
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 8.4e-52 208.0 227 49.8
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 3.2e-51 206.1 243 48.6
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 7.1e-51 204.9 235 47.7
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 1.0e-49 201.1 246 45.9
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 5.1e-49 198.7 336 39.9
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 5.6e-48 195.3 210 48.6
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 3.7e-47 192.6 183 53.0
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.5e-45 187.2 206 47.1
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 2.5e-43 179.9 219 43.8
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 4.3e-40 169.1 410 31.0
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 1.6e-39 167.2 218 40.8
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 8.2e-39 164.9 209 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 1.8e-38 163.7 161 50.9
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 2.0e-37 160.2 167 55.1
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 2.6e-37 159.8 177 50.8
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 4.5e-37 159.1 205 45.9
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 5.0e-36 155.6 231 40.3
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 3.2e-35 152.9 154 53.2
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 2.2e-31 140.2 147 49.7
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 4.1e-30 136.0 154 49.4
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 9.1e-30 134.8 189 43.4
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 1.2e-29 134.4 128 57.8
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.8e-22 110.5 220 32.7
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 2.4e-22 110.2 96 54.2
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 5.0e-20 102.4 87 59.8
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 2.7e-10 70.1 51 56.9
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 1.3e-07 61.2 48 60.4
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.8e-07 60.1 118 30.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.8e-07 60.1 118 30.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.8e-07 60.1 118 30.5
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 2.8e-07 60.1 118 30.5
FAN17G1940 Fragaria x ananassa HOM05D006451 ORTHO05D007680 2.8e-07 60.1 117 34.2
FAN22G0671 Fragaria x ananassa HOM05D006451 ORTHO05D007680 2.8e-07 60.1 117 34.2
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 4.8e-07 59.3 118 30.5
Pp3c22_12710 Physcomitrium patens HOM05D001916 ORTHO05D003272 4.8e-07 59.3 122 32.8
RcHm_v2.0_Chr4g0387501 Rosa chinensis HOM05D006451 ORTHO05D007680 4.8e-07 59.3 134 35.1
CsaV3_2G013500 Cucumis sativus L. HOM05D006451 ORTHO05D007680 6.3e-07 58.9 115 32.2
FvH4_4g00880 Fragaria vesca HOM05D006451 ORTHO05D007680 6.3e-07 58.9 117 33.3
FAN12G3362 Fragaria x ananassa HOM05D006451 ORTHO05D007680 8.2e-07 58.5 117 33.3
QL06p001354 Quercus lobata HOM05D006451 ORTHO05D007680 1.8e-06 57.4 117 35.0
CANSAT54G0997 Cannabis sativa HOM05D001789 ORTHO05D001755 2.4e-06 57.0 110 33.6
Manes.03G174100 Manihot esculenta HOM05D006451 ORTHO05D007680 3.1e-06 56.6 118 30.5
Manes.15G032000 Manihot esculenta HOM05D006451 ORTHO05D007680 3.1e-06 56.6 121 30.6
Haze_11218 Corylus avellana HOM05D006451 ORTHO05D007680 4.1e-06 56.2 118 30.5
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 4.1e-06 56.2 120 30.8
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 4.1e-06 56.2 117 33.3
CANSAT78G2142 Cannabis sativa HOM05D006451 ORTHO05D007680 5.3e-06 55.8 115 31.3
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 5.3e-06 55.8 118 28.8
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 5.3e-06 55.8 118 31.4
CiPaw.01G196900 Carya illinoinensis HOM05D006451 ORTHO05D007680 7.0e-06 55.5 118 30.5
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 7.0e-06 55.5 119 32.8
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 9.1e-06 55.1 120 31.7
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 9.1e-06 55.1 120 30.8
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 9.1e-06 55.1 121 33.1


User provided reference genes

Program Settings