Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 0.0e+00 1199.5 585 100.0
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.6e-184 649.4 696 52.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 5.4e-174 615.1 673 50.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.1e-155 554.3 715 46.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.7e-140 503.8 729 43.5
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.1e-133 480.3 679 44.9
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 8.4e-127 458.4 822 37.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.2e-120 438.0 762 38.5
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 9.9e-120 434.9 820 36.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.4e-119 432.2 826 36.8
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 5.5e-118 429.1 792 35.7
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.8e-113 414.1 790 36.6
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.0e-111 408.3 741 36.8
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.0e-111 408.3 786 36.0
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.3e-111 407.9 806 34.7
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 6.5e-111 405.6 809 34.6
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 8.4e-111 405.2 819 34.9
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.1e-110 404.8 784 34.8
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-110 404.8 806 34.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.2e-110 403.3 801 35.8
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.2e-109 401.4 791 35.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.5e-109 399.8 823 35.1
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 7.9e-109 398.7 838 35.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.8e-108 397.5 777 36.4
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 8.7e-108 395.2 812 34.9
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 8.7e-108 395.2 779 35.0
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.5e-107 393.7 794 36.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.3e-107 392.9 799 35.9
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.2e-106 390.6 830 32.3
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.2e-106 390.6 811 34.9
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 2.8e-106 390.2 833 33.6
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 8.2e-106 388.7 736 36.3
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.8e-105 387.5 790 35.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 3.1e-105 386.7 812 34.2
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.1e-105 386.7 812 34.2
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 2.6e-104 383.6 800 35.6
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 5.9e-104 382.5 830 33.4
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.3e-103 381.3 828 34.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.3e-103 381.3 783 34.4
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.9e-103 380.2 788 34.6
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 2.5e-102 377.1 821 34.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 9.4e-102 375.2 791 34.3
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.4e-102 375.2 815 34.8
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 2.1e-101 374.0 806 35.1
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 6.1e-101 372.5 797 33.9
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 6.1e-101 372.5 801 33.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.8e-100 370.9 810 33.5
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.8e-100 370.9 796 34.8
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.9e-100 369.8 844 33.1
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 5.7e-99 365.9 793 33.7
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 7.4e-99 365.5 798 33.2
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.3e-98 364.8 806 32.6
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.8e-98 363.6 830 31.7
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 4.1e-97 359.8 834 33.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 4.1e-97 359.8 819 33.5
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 5.3e-97 359.4 791 32.9
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.0e-96 357.5 886 32.7
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.5e-96 356.3 783 33.3
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 4.5e-96 356.3 796 32.7
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.7e-96 355.5 825 33.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.9e-95 353.6 744 34.5
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.8e-95 353.2 833 31.6
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 8.5e-95 352.1 811 32.6
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-94 351.3 679 36.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.2e-93 348.2 804 32.5
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 2.1e-93 347.4 829 32.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.7e-93 347.1 813 33.2
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 2.7e-93 347.1 828 32.9
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.0e-91 340.9 786 32.4
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 9.7e-91 338.6 765 32.4
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 6.3e-90 335.9 680 36.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.0e-89 332.4 818 31.3
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.2e-88 331.6 819 31.1
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 2.2e-87 327.4 934 29.7
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.1e-86 325.1 788 31.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 7.2e-86 322.4 886 30.4
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 9.4e-86 322.0 965 28.7
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.6e-85 321.2 497 39.2
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 8.0e-85 318.9 788 31.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 2.2e-82 310.8 711 32.3
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.8e-82 310.5 989 27.2
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 2.8e-82 310.5 569 35.3
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 3.1e-81 307.0 715 32.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 5.9e-80 302.8 810 30.2
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.9e-78 297.7 908 29.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 8.0e-77 292.4 679 34.0
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 1.5e-75 288.1 1035 26.9
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 4.4e-75 286.6 851 29.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 7.5e-75 285.8 775 29.9
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 6.3e-74 282.7 757 30.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 3.5e-72 276.9 777 29.1
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.1e-70 271.9 776 29.6
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-70 271.2 500 37.8
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 3.2e-70 270.4 580 32.2
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.2e-69 268.5 800 29.2
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.2e-66 257.7 972 26.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.5e-62 244.2 488 35.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 4.7e-61 240.0 667 28.8
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.3e-60 237.7 407 37.3
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 6.8e-60 236.1 428 39.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 2.2e-58 231.1 468 34.6
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 5.4e-57 226.5 469 34.5
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.5e-56 223.8 426 34.3
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 7.8e-56 222.6 723 26.7
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 7.8e-56 222.6 397 35.8
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.7e-55 221.5 429 34.7
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 3.9e-55 220.3 485 32.2
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 6.6e-55 219.5 392 37.5
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 3.3e-54 217.2 414 35.0
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.3e-54 216.9 406 35.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.3e-54 216.9 825 26.3
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 9.5e-54 215.7 390 35.6
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.6e-53 214.9 418 34.7
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.7e-53 213.4 474 32.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 6.1e-53 213.0 412 34.2
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.8e-52 211.5 391 36.8
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.8e-52 211.5 391 36.8
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 4.0e-52 210.3 379 35.9
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 5.2e-52 209.9 382 36.4
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 6.8e-52 209.5 486 33.3
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-51 208.4 382 36.6
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.0e-51 208.0 459 33.1
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 4.4e-51 206.8 490 33.5
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 5.8e-51 206.5 418 35.6
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.2e-50 204.5 388 35.8
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.1e-49 202.2 419 35.1
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.2e-49 200.7 196 47.4
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.7e-47 194.9 393 34.9
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.6e-47 193.0 618 29.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 6.6e-47 193.0 378 33.6
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.3e-46 190.7 345 38.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-45 188.7 632 28.5
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.8e-45 187.6 401 30.9
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.8e-45 187.6 401 30.9
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.8e-45 187.6 409 31.5
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 3.6e-45 187.2 694 28.2
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 2.3e-44 184.5 392 32.4
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 3.0e-39 167.5 569 24.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-38 165.6 427 30.0
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.3e-36 157.9 443 32.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 2.0e-35 154.8 450 29.1
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.8e-35 153.3 493 27.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.1e-33 147.1 383 29.5
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 5.4e-33 146.7 462 31.8
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 3.9e-31 140.6 109 59.6
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 4.7e-29 133.7 100 59.0
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 6.8e-28 129.8 197 40.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.3e-26 125.6 616 23.4
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.8e-26 124.0 196 42.9
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 6.6e-23 113.2 174 40.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-22 112.5 120 51.7
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 1.6e-21 108.6 181 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.8e-20 105.1 197 33.5
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.5e-19 102.1 173 37.6
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-13 82.0 298 25.2
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 9.0e-12 76.3 84 41.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-11 75.9 66 54.5
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 1.9e-09 68.6 61 57.4
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 5.4e-09 67.0 87 37.9
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.7e-08 64.7 50 62.0
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.3e-07 61.6 83 39.8


User provided reference genes

Program Settings