Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 2.4e-219 765.4 437 100.0
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.1e-158 563.9 446 74.4
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 4.5e-157 558.5 438 74.2
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.5e-131 473.0 454 60.1
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.8e-129 464.5 459 58.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.7e-128 461.1 454 59.9
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-126 456.8 460 63.3
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.3e-124 450.7 457 62.8
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 3.8e-124 449.1 450 62.9
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 5.0e-124 448.7 467 61.2
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.5e-123 446.4 449 59.2
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 3.2e-123 446.0 450 62.9
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.2e-123 444.9 454 59.5
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.2e-123 444.9 455 63.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.1e-122 441.8 459 59.3
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.9e-122 441.4 469 60.3
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.8e-121 440.3 462 61.0
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 6.7e-121 438.3 476 57.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 1.1e-120 437.6 464 59.3
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.6e-120 436.4 458 60.3
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.7e-119 433.7 468 58.1
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.7e-119 433.7 472 59.5
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-118 431.0 456 57.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.1e-118 429.1 458 56.6
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.1e-118 429.1 452 60.4
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 5.3e-118 428.7 458 56.3
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 5.3e-118 428.7 452 61.3
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.6e-117 426.4 468 53.4
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.7e-117 424.9 468 53.8
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-116 424.1 468 53.0
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.7e-116 423.7 482 54.4
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.7e-116 423.7 452 59.1
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.5e-116 421.8 435 57.5
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 8.5e-116 421.4 452 60.2
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 2.5e-115 419.9 463 60.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 4.2e-115 419.1 452 56.6
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.2e-114 417.5 453 61.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.6e-114 417.2 445 60.4
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 8.0e-114 414.8 496 54.2
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.8e-113 413.7 452 59.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 3.0e-113 412.9 439 62.4
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 8.8e-113 411.4 462 58.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.8e-111 406.4 443 61.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.7e-111 406.0 474 57.2
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 4.8e-111 405.6 465 58.9
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 6.3e-111 405.2 505 51.9
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.8e-110 403.7 462 58.9
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.3e-110 402.1 502 53.2
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 7.0e-110 401.7 455 59.3
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 7.0e-110 401.7 450 57.8
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 7.0e-110 401.7 485 52.8
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 7.0e-110 401.7 442 60.6
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.2e-109 401.0 450 59.8
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.2e-109 401.0 516 51.9
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 3.5e-109 399.4 468 56.6
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.3e-108 397.5 492 55.7
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.9e-108 396.4 459 58.0
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 6.5e-108 395.2 492 54.5
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 8.5e-108 394.8 450 57.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 1.9e-107 393.7 437 54.0
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.9e-107 393.7 507 51.7
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.1e-106 390.2 437 54.7
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.1e-106 390.2 510 51.6
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 6.1e-106 388.7 494 51.0
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 6.1e-106 388.7 522 50.8
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 1.8e-105 387.1 502 52.8
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.8e-105 385.2 451 58.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 4.4e-104 382.5 476 54.4
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.2e-103 380.2 507 50.7
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.2e-103 380.2 426 55.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 8.3e-103 378.3 480 53.3
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.1e-102 377.9 488 54.3
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 1.2e-101 374.4 463 53.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.0e-101 373.6 450 57.1
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 2.7e-101 373.2 531 49.9
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 7.7e-101 371.7 521 49.3
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.1e-99 367.9 453 53.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.6e-98 364.0 451 52.5
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 4.7e-98 362.5 456 52.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.7e-98 362.5 456 51.5
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.3e-97 360.1 497 49.7
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.2e-96 357.8 460 53.3
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 2.8e-95 353.2 455 53.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.8e-95 353.2 450 51.6
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.1e-94 351.3 443 56.0
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.0e-94 348.6 452 51.5
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.5e-93 345.9 439 50.6
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 7.7e-93 345.1 452 51.1
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 8.6e-92 341.7 435 53.1
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.1e-91 341.3 432 52.8
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-90 337.8 444 51.1
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.1e-90 337.0 444 49.5
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.7e-90 335.9 453 49.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 4.7e-90 335.9 445 54.4
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 4.7e-90 335.9 471 50.3
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.8e-89 334.0 440 54.8
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 5.2e-89 332.4 495 46.7
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.2e-87 327.0 449 49.0
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 2.8e-87 326.6 454 50.0
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.7e-87 326.2 450 51.1
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 4.9e-87 325.9 468 47.6
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.5e-85 319.7 425 48.2
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.3e-84 317.0 503 46.1
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 4.7e-82 309.3 405 48.6
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.0e-81 308.1 524 44.3
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.4e-81 307.8 199 79.4
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.5e-80 304.3 469 43.3
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 2.4e-78 297.0 428 46.0
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 5.4e-78 295.8 169 87.0
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.7e-77 293.5 421 51.3
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.7e-76 290.8 164 86.6
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.9e-76 289.7 511 41.5
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 3.9e-76 289.7 447 44.7
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.9e-75 287.3 469 44.8
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 5.2e-73 279.3 311 54.0
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 4.4e-72 276.2 467 47.1
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 7.1e-70 268.9 184 74.5
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.4e-64 249.6 469 45.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 3.2e-62 243.4 358 46.1
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.7e-60 237.7 375 45.9
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.5e-59 234.6 391 45.5
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.8e-55 219.9 128 83.6
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 5.1e-52 209.5 506 37.9
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 5.6e-51 206.1 390 38.7
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 9.0e-49 198.7 164 65.2
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.4e-48 196.8 311 49.5
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.0e-40 171.0 433 34.6
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 5.5e-38 162.9 177 50.3
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.6e-34 151.4 409 37.7
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 2.8e-34 150.6 184 46.2
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.2e-30 137.1 147 47.6
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.6e-27 125.6 82 74.4
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.1e-25 122.1 65 95.4
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.1e-25 122.1 174 47.7
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.1e-19 102.1 97 58.8
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.3e-17 93.2 104 50.0
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 4.5e-16 90.1 101 50.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 4.5e-16 90.1 101 50.5
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.2e-15 87.8 123 59.3
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 4.2e-14 83.6 49 79.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.6e-13 81.6 49 79.6
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 2.1e-13 81.3 233 31.8
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 4.8e-10 70.1 408 26.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 4.8e-10 70.1 408 26.0
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 2.0e-08 64.7 100 43.0
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 1.1e-06 58.9 35 82.9
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 5.5e-06 56.6 123 31.7
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 9.4e-06 55.8 119 28.6
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 9.4e-06 55.8 119 28.6
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 9.4e-06 55.8 119 28.6


User provided reference genes

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