Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 0.0e+00 1247.3 614 100.0
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-297 1025.8 622 80.9
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.6e-288 995.0 605 81.5
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 6.0e-285 983.8 571 84.1
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 5.3e-281 970.7 653 74.1
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.3e-278 959.9 624 75.0
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 2.3e-276 955.3 571 79.3
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 8.7e-276 953.4 589 77.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.9e-275 952.2 581 79.2
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 9.7e-275 949.9 593 77.1
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 1.3e-274 949.5 629 73.1
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.6e-274 949.1 607 75.6
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 2.8e-274 948.3 641 73.8
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 2.8e-274 948.3 641 73.8
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 6.3e-274 947.2 591 77.2
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 6.3e-274 947.2 623 74.6
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.1e-273 946.4 628 73.6
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.4e-273 946.0 645 72.6
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 2.0e-272 942.2 639 72.9
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 4.5e-272 941.0 634 72.7
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 5.9e-272 940.6 628 73.4
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 5.9e-272 940.6 588 76.0
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 5.9e-272 940.6 571 78.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 7.6e-272 940.3 574 78.0
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.7e-271 939.1 632 73.3
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.7e-271 939.1 613 74.7
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 2.2e-271 938.7 558 79.0
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.9e-271 938.3 583 76.5
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.9e-271 938.3 622 73.6
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 5.0e-271 937.6 595 76.5
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 6.5e-271 937.2 639 72.8
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.5e-271 937.2 593 75.5
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 6.5e-271 937.2 631 73.4
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.1e-270 936.4 584 76.5
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 3.2e-270 934.9 604 74.8
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 4.2e-270 934.5 583 77.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 4.2e-270 934.5 571 78.5
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.2e-270 933.7 635 72.9
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 7.2e-270 933.7 602 75.1
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 9.4e-270 933.3 558 79.9
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.2e-269 932.9 575 77.0
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.2e-269 932.9 639 72.0
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.1e-269 932.2 632 72.3
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 4.6e-269 931.0 585 76.2
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.0e-268 929.9 612 73.9
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.4e-268 929.5 583 75.8
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.4e-268 929.5 594 76.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.4e-268 929.5 627 72.7
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.8e-268 929.1 640 72.2
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.8e-268 929.1 670 69.3
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.0e-268 928.3 575 77.0
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 3.0e-268 928.3 595 74.8
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.1e-268 927.5 637 72.8
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 5.1e-268 927.5 607 74.5
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 8.8e-268 926.8 570 77.9
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.1e-267 926.4 653 70.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 4.3e-267 924.5 550 80.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.3e-267 924.5 621 73.1
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 9.7e-267 923.3 605 74.7
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.7e-266 922.5 596 75.7
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.7e-266 922.5 578 77.0
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.7e-266 922.5 618 72.8
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 2.8e-266 921.8 625 72.5
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.8e-266 921.0 624 72.9
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 4.8e-266 921.0 612 73.0
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 6.3e-266 920.6 584 75.3
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 6.3e-266 920.6 573 76.1
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.1e-265 919.8 581 75.9
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.8e-265 919.1 641 69.9
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.8e-265 919.1 589 75.2
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 6.9e-265 917.1 612 74.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 6.9e-265 917.1 658 69.0
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.2e-264 916.4 619 71.7
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.2e-264 916.4 646 70.6
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 3.4e-264 914.8 581 75.7
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.5e-264 914.4 581 75.7
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 2.2e-263 912.1 631 71.0
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.2e-263 912.1 622 71.4
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 3.8e-263 911.4 621 70.9
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 3.8e-263 911.4 593 73.5
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.5e-263 910.6 581 75.2
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.1e-262 909.8 539 79.8
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.1e-262 909.8 550 77.8
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.4e-262 909.4 544 78.9
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 7.2e-262 907.1 585 73.8
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 9.4e-262 906.7 552 77.0
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.6e-261 906.0 628 71.8
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.7e-261 905.2 624 70.5
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 4.7e-261 904.4 583 74.3
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 1.4e-260 902.9 625 70.7
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.4e-260 902.9 623 70.9
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 3.0e-260 901.7 625 70.1
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 3.0e-260 901.7 617 71.3
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.9e-260 901.4 625 70.1
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.1e-259 899.8 628 71.3
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.0e-259 899.0 565 76.5
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 4.8e-258 894.4 736 63.6
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 4.8e-258 894.4 529 80.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.3e-258 894.0 628 71.0
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 6.3e-258 894.0 532 80.1
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 8.2e-258 893.6 583 73.2
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 8.2e-258 893.6 574 75.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 7.7e-256 887.1 551 76.0
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.7e-253 878.6 620 70.3
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.4e-252 876.3 620 70.8
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 8.8e-252 873.6 617 70.8
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 4.8e-250 867.8 624 69.1
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 9.1e-249 863.6 546 74.9
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.5e-246 856.3 532 74.8
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.0e-243 845.9 577 72.1
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.3e-242 843.2 549 72.9
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 2.8e-242 842.0 622 67.5
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.5e-235 819.7 634 66.2
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 2.3e-228 795.8 547 68.4
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 5.7e-227 791.2 491 76.2
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.3e-226 787.7 601 66.7
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 5.4e-225 784.6 597 64.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 1.5e-222 776.5 551 67.9
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 5.2e-220 768.1 448 81.9
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.5e-219 766.5 448 81.2
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.6e-216 756.5 548 67.5
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-210 736.1 439 79.3
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.9e-201 706.4 517 66.7
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.4e-185 653.7 523 63.7
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.6e-184 650.2 458 69.2
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 6.6e-183 644.8 538 58.2
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 2.9e-162 576.2 362 76.2
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 9.0e-156 554.7 567 53.4
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 7.2e-153 545.0 345 75.4
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.4e-142 509.2 577 47.1
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.3e-141 507.7 380 69.2
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 5.0e-138 495.7 547 51.4
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.2e-133 480.3 278 80.6
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.4e-132 477.6 418 59.1
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 3.1e-132 476.5 280 79.6
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 1.7e-125 454.1 328 70.1
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 8.6e-114 415.2 576 42.0
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 9.8e-102 375.2 289 63.0
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.7e-96 356.3 649 36.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 2.1e-83 314.3 185 79.5
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.1e-79 302.0 265 61.1
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 6.8e-79 299.3 596 34.6
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.7e-77 294.7 188 71.8
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.1e-76 292.0 499 37.1
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-76 292.0 179 78.2
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.0e-75 286.2 179 76.5
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 2.1e-72 277.7 167 76.6
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.0e-71 273.5 580 32.9
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 3.6e-64 250.4 610 32.3
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.4e-62 243.8 322 45.7
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 3.3e-57 227.3 198 60.1
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.3e-57 227.3 141 75.9
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.2e-54 218.8 595 29.2
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.0e-45 189.1 120 77.5
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.6e-43 180.3 116 74.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.5e-41 174.5 100 82.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 2.4e-39 167.9 107 74.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.5e-38 165.2 156 54.5
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.4e-38 164.1 111 69.4
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.0e-30 138.3 98 68.4
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 8.5e-29 132.9 77 76.6
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 9.4e-28 129.4 65 90.8
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.2e-27 129.0 97 62.9
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.8e-26 125.2 137 48.9
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 6.7e-26 123.2 67 85.1
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.7e-19 101.3 64 75.0
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.2e-11 75.9 38 92.1
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-11 75.9 54 70.4
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 3.4e-09 67.8 62 54.8
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.2e-08 65.1 58 62.1
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 3.7e-08 64.3 120 37.5


User provided reference genes

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