Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0391121 Helianthus annuus HOM05D000321 ORTHO05D000204 3.6e-156 555.1 319 100.0
HanXRQChr15g0481591 Helianthus annuus HOM05D000321 ORTHO05D000204 1.3e-49 201.1 174 68.4
MD05G1278500 Malus domestica HOM05D000321 ORTHO05D000204 3.6e-39 166.4 174 55.2
Dinv32207 Davidia involucrata HOM05D000321 ORTHO05D000204 1.8e-38 164.1 174 54.6
Dinv21514 Davidia involucrata HOM05D000321 ORTHO05D000204 6.8e-38 162.2 174 52.9
ECA236G1212 Erigeron canadensis HOM05D000321 ORTHO05D000204 6.8e-38 162.2 172 54.1
Hma1.2p1_0586F.1_g183800 Hydrangea macrophylla HOM05D000321 ORTHO05D000204 6.8e-38 162.2 179 53.6
Sabra16G0236100 Salix brachista HOM05D000321 ORTHO05D000204 1.2e-37 161.4 174 54.6
Sabra16G0235900 Salix brachista HOM05D000321 ORTHO05D000204 5.7e-37 159.1 173 53.8
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 7.5e-37 158.7 115 93.9
Cc09_g08710 Coffea canephora HOM05D000321 ORTHO05D000204 9.8e-37 158.3 174 52.9
Dinv21505 Davidia involucrata HOM05D000321 ORTHO05D000204 9.8e-37 158.3 174 52.9
Actinidia39593 Actinidia chinensis HOM05D000321 ORTHO05D000204 2.9e-36 156.8 174 52.9
PGR083G0400 Punica granatum HOM05D000321 ORTHO05D000204 2.9e-36 156.8 174 52.9
CSS0035586 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 3.7e-36 156.4 174 52.3
CSS0042962 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 3.7e-36 156.4 174 52.3
Oeu015208.1 Olea europaea HOM05D000321 ORTHO05D000204 3.7e-36 156.4 174 52.3
MD10G1257300 Malus domestica HOM05D000321 ORTHO05D000204 6.4e-36 155.6 174 52.3
Rhsim02G0159600 Rhododendron simsii HOM05D000321 ORTHO05D000204 6.4e-36 155.6 174 52.3
Potri.001G358300 Populus trichocarpa HOM05D000321 ORTHO05D000204 1.1e-35 154.8 176 54.0
Lsat_1_v5_gn_7_29160 Lactuca sativa HOM05D000321 ORTHO05D000204 1.4e-35 154.5 172 53.5
TAR626G0086 Trochodendron aralioides HOM05D000321 ORTHO05D000204 1.4e-35 154.5 174 51.7
Ciclev10014407m.g Citrus clementina HOM05D000321 ORTHO05D000204 1.8e-35 154.1 174 51.7
GSVIVG01021562001 Vitis vinifera HOM05D000321 ORTHO05D000204 1.8e-35 154.1 175 51.4
TWI09G0268 Tripterygium wilfordii HOM05D000321 ORTHO05D000204 7.0e-35 152.1 174 51.1
vmacro10968 Vaccinium macrocarpon HOM05D000321 ORTHO05D000204 1.6e-34 151.0 174 51.1
Gohir.D06G144700 Gossypium hirsutum HOM05D000321 ORTHO05D000204 2.0e-34 150.6 174 52.3
Manes.17G074400 Manihot esculenta HOM05D000321 ORTHO05D000204 2.7e-34 150.2 175 51.4
QL05p054856 Quercus lobata HOM05D000321 ORTHO05D000204 2.7e-34 150.2 174 50.6
Eucgr.D00261 Eucalyptus grandis HOM05D000321 ORTHO05D000204 3.5e-34 149.8 174 49.4
TAR627G0929 Trochodendron aralioides HOM05D000321 ORTHO05D000204 3.5e-34 149.8 174 50.6
MSTRG.7519 Avicennia marina HOM05D000321 ORTHO05D000204 4.6e-34 149.4 174 49.4
Haze_05697 Corylus avellana HOM05D000321 ORTHO05D000204 4.6e-34 149.4 175 53.1
Gorai.010G168400 Gossypium raimondii HOM05D000321 ORTHO05D000204 4.6e-34 149.4 174 52.3
Lj2A323T72 Lonicera japonica HOM05D000321 ORTHO05D000204 4.6e-34 149.4 174 50.6
CANSAT35G0620 Cannabis sativa HOM05D000321 ORTHO05D000204 5.9e-34 149.1 172 50.6
Gohir.D05G148300 Gossypium hirsutum HOM05D000321 ORTHO05D000204 7.8e-34 148.7 174 52.3
Gorai.009G152500 Gossypium raimondii HOM05D000321 ORTHO05D000204 7.8e-34 148.7 174 52.3
Ah.09g232460 Amaranthus hybridus HOM05D000321 ORTHO05D000204 1.0e-33 148.3 174 48.9
PGSC0003DMG400002290 Solanum tuberosum HOM05D000321 ORTHO05D000204 1.0e-33 148.3 173 49.7
Glyma.15G091600 Glycine max HOM05D000321 ORTHO05D000204 1.3e-33 147.9 174 50.6
Thecc.06G143600 Theobroma cacao HOM05D000321 ORTHO05D000204 1.3e-33 147.9 174 51.1
Actinidia26537 Actinidia chinensis HOM05D000321 ORTHO05D000204 1.7e-33 147.5 174 50.6
Lj1A1168T69 Lonicera japonica HOM05D000321 ORTHO05D000204 1.7e-33 147.5 177 49.2
CSS0025177 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 2.3e-33 147.1 172 50.6
Cpa.g.sc17.62 Carica papaya HOM05D000321 ORTHO05D000204 2.3e-33 147.1 174 50.0
Cfa000888 Carpinus fangiana HOM05D000321 ORTHO05D000204 2.3e-33 147.1 175 52.6
Glyma.13G220900 Glycine max HOM05D000321 ORTHO05D000204 2.3e-33 147.1 173 49.7
MBI02_g15132_MAGBIO Magnolia biondii HOM05D000321 ORTHO05D000204 2.3e-33 147.1 173 48.6
Eucgr.D00260 Eucalyptus grandis HOM05D000321 ORTHO05D000204 3.9e-33 146.4 173 50.3
VMungo0540G0315 Vigna mungo HOM05D000321 ORTHO05D000204 3.9e-33 146.4 173 49.1
CsaV3_6G052110 Cucumis sativus L. HOM05D000321 ORTHO05D000204 5.0e-33 146.0 174 47.7
FAN11G3273 Fragaria x ananassa HOM05D000321 ORTHO05D000204 5.0e-33 146.0 174 48.3
FAN25G2542 Fragaria x ananassa HOM05D000321 ORTHO05D000204 5.0e-33 146.0 174 47.7
Prupe.4G086300 Prunus persica HOM05D000321 ORTHO05D000204 5.0e-33 146.0 174 49.4
RcHm_v2.0_Chr5g0015001 Rosa chinensis HOM05D000321 ORTHO05D000204 5.0e-33 146.0 174 48.9
FAN21G1566 Fragaria x ananassa HOM05D000321 ORTHO05D000204 6.6e-33 145.6 174 48.3
Sc05g0005950 Simmondsia chinensis HOM05D000321 ORTHO05D000204 8.6e-33 145.2 174 48.3
MSTRG.16272 Avicennia marina HOM05D000321 ORTHO05D000204 1.5e-32 144.4 174 48.3
FvH4_3g04980 Fragaria vesca HOM05D000321 ORTHO05D000204 1.5e-32 144.4 174 47.7
Cfa000887 Carpinus fangiana HOM05D000321 ORTHO05D000204 1.9e-32 144.1 174 51.7
MELO3C007100.2 Cucumis melo HOM05D000321 ORTHO05D000204 1.9e-32 144.1 174 47.1
Sed0017151 Sechium edule HOM05D000321 ORTHO05D000204 1.9e-32 144.1 174 47.7
CiPaw.09G119100 Carya illinoinensis HOM05D000321 ORTHO05D000204 2.5e-32 143.7 174 49.4
COL.COLO4_31003 Corchorus olitorius HOM05D000321 ORTHO05D000204 2.5e-32 143.7 174 50.0
Solyc08g023440.3 Solanum lycopersicum HOM05D000321 ORTHO05D000204 2.5e-32 143.7 173 48.6
EL10Ac8g19554 Beta vulgaris HOM05D000321 ORTHO05D000204 3.3e-32 143.3 174 47.7
Duzib235G0777 Durio zibethinus HOM05D000321 ORTHO05D000204 3.3e-32 143.3 174 50.6
unitig_26.g9769 Utricularia gibba HOM05D000321 ORTHO05D000204 3.3e-32 143.3 174 47.1
DCAR_003880 Daucus carota HOM05D000321 ORTHO05D000204 4.3e-32 142.9 174 48.9
Lalb_Chr18g0055191 Lupinus albus HOM05D000321 ORTHO05D000204 4.3e-32 142.9 174 46.6
Sopen08g008540 Solanum pennellii HOM05D000321 ORTHO05D000204 4.3e-32 142.9 173 48.6
THA.LOC104814315 Tarenaya hassleriana HOM05D000321 ORTHO05D000204 4.3e-32 142.9 174 50.0
ClCG01G024950 Citrullus lanatus HOM05D000321 ORTHO05D000204 5.6e-32 142.5 174 46.0
CAN.G3781.1 Capsicum annuum HOM05D000321 ORTHO05D000204 7.3e-32 142.1 172 45.9
FAN16G2070 Fragaria x ananassa HOM05D000321 ORTHO05D000204 7.3e-32 142.1 173 47.4
Lj6g0023540 Lotus japonicus HOM05D000321 ORTHO05D000204 7.3e-32 142.1 174 46.6
DCAR_007867 Daucus carota HOM05D000321 ORTHO05D000204 9.5e-32 141.7 176 48.9
Phvul.006G167700 Phaseolus vulgaris HOM05D000321 ORTHO05D000204 9.5e-32 141.7 177 46.9
Sed0011105 Sechium edule HOM05D000321 ORTHO05D000204 9.5e-32 141.7 174 44.8
AUR62002675 Chenopodium quinoa HOM05D000321 ORTHO05D000204 1.2e-31 141.4 177 47.5
Peaxi162Scf00045g02324 Petunia axillaris HOM05D000321 ORTHO05D000204 1.2e-31 141.4 172 47.1
Hund21553 Selenicereus undatus HOM05D000321 ORTHO05D000204 1.2e-31 141.4 174 46.6
Ah.05g177180 Amaranthus hybridus HOM05D000321 ORTHO05D000204 1.6e-31 141.0 174 47.7
CAN.G36.22 Capsicum annuum HOM05D000321 ORTHO05D000204 1.6e-31 141.0 172 45.3
Migut.M01866 Erythranthe guttata HOM05D000321 ORTHO05D000204 1.6e-31 141.0 174 46.0
arahy.Tifrunner.gnm1.ann1.EC4CEA Arachis hypogaea HOM05D000321 ORTHO05D000204 2.1e-31 140.6 173 46.8
arahy.Tifrunner.gnm1.ann1.1QW2C7 Arachis hypogaea HOM05D000321 ORTHO05D000204 2.8e-31 140.2 173 46.8
AUR62002674 Chenopodium quinoa HOM05D000321 ORTHO05D000204 3.6e-31 139.8 177 45.2
HanXRQChr01g0013931 Helianthus annuus HOM05D000411 ORTHO05D000310 3.6e-31 139.8 104 76.9
SalBow8G5135 Salvia bowleyana HOM05D000321 ORTHO05D000204 3.6e-31 139.8 174 47.7
QL05p054808 Quercus lobata HOM05D000321 ORTHO05D000204 4.7e-31 139.4 177 48.0
AUR62030130 Chenopodium quinoa HOM05D000321 ORTHO05D000204 1.0e-30 138.3 174 45.4
DCAR_027883 Daucus carota HOM05D000321 ORTHO05D000204 1.0e-30 138.3 174 46.0
Gohir.A06G141300 Gossypium hirsutum HOM05D000321 ORTHO05D000204 1.0e-30 138.3 174 48.9
HanXRQChr03g0067881 Helianthus annuus HOM05D000411 ORTHO05D004207 1.0e-30 138.3 101 78.2
Ca_00515_v3 Cicer arietinum L. HOM05D000321 ORTHO05D000204 1.4e-30 137.9 173 46.8
Medtr2g018780 Medicago truncatula HOM05D000321 ORTHO05D000204 1.8e-30 137.5 173 46.8
AUR62030129 Chenopodium quinoa HOM05D000321 ORTHO05D000204 3.1e-30 136.7 202 43.1
CDE05G0206 Ceratophyllum demersum HOM05D000321 ORTHO05D000204 4.0e-30 136.3 174 44.8
Psat1g191440 Pisum sativum HOM05D000321 ORTHO05D000204 4.0e-30 136.3 173 44.5
Nn4g26640 Nelumbo nucifera HOM05D000321 ORTHO05D000204 5.2e-30 136.0 174 47.1
Nitab4.5_0012857g0010 Nicotiana tabacum HOM05D000321 ORTHO05D000204 8.9e-30 135.2 173 45.7
TPR.G26231 Trifolium pratense HOM05D000321 ORTHO05D000204 8.9e-30 135.2 173 45.1
CARHR029750 Cardamine hirsuta HOM05D000321 ORTHO05D000204 2.0e-29 134.0 172 47.1
MBI18_g10591_MAGBIO Magnolia biondii HOM05D000321 ORTHO05D000204 3.4e-29 133.3 174 44.3
AT1G30360 Arabidopsis thaliana HOM05D000321 ORTHO05D000204 1.7e-28 131.0 172 45.9
Hund17713 Selenicereus undatus HOM05D000321 ORTHO05D000204 2.9e-28 130.2 174 42.5
Carub.0001s2856 Capsella rubella HOM05D000321 ORTHO05D000204 3.7e-28 129.8 172 45.9
PSO675G8841 Papaver somniferum HOM05D000321 ORTHO05D000204 4.9e-28 129.4 176 44.9
Thhalv10006933m.g Eutrema salsugineum HOM05D000321 ORTHO05D000204 6.4e-28 129.0 172 45.9
A09p36100 Brassica napus HOM05D000321 ORTHO05D000204 1.1e-27 128.3 172 44.8
BraA09t39134Z Brassica rapa HOM05D000321 ORTHO05D000204 1.1e-27 128.3 172 44.8
BcaC05g27069 Brassica carinata HOM05D000321 ORTHO05D000204 2.4e-27 127.1 172 44.2
C05p29310 Brassica napus HOM05D000321 ORTHO05D000204 2.4e-27 127.1 172 44.2
BolC5t31663H Brassica oleracea HOM05D000321 ORTHO05D000204 2.4e-27 127.1 172 44.2
Nitab4.5_0000315g0120 Nicotiana tabacum HOM05D000321 ORTHO05D000204 2.4e-27 127.1 174 44.3
BcaB03g12210 Brassica carinata HOM05D000321 ORTHO05D000204 5.4e-27 125.9 175 46.3
PSO541G3770 Papaver somniferum HOM05D000321 ORTHO05D000204 1.2e-26 124.8 176 44.3
AL1G44290 Arabidopsis lyrata HOM05D000321 ORTHO05D000204 1.6e-26 124.4 172 44.8
BcaB07g32645 Brassica carinata HOM05D000321 ORTHO05D000204 2.0e-26 124.0 172 44.8
BcaC01g00187 Brassica carinata HOM05D000321 ORTHO05D000204 2.7e-26 123.6 173 45.7
C03p76710 Brassica napus HOM05D000321 ORTHO05D000204 2.7e-26 123.6 173 45.7
SGA_v2.0_scaffold223G42830 Striga asiatica HOM05D000321 ORTHO05D000204 2.7e-26 123.6 208 39.9
Sp1g26200 Schrenkiella parvula HOM05D000321 ORTHO05D000204 6.0e-26 122.5 175 46.3
A08p24500 Brassica napus HOM05D000321 ORTHO05D000204 7.8e-26 122.1 173 45.1
BraA08t34406Z Brassica rapa HOM05D000321 ORTHO05D000204 7.8e-26 122.1 173 45.1
BolC3t19926H Brassica oleracea HOM05D000321 ORTHO05D000204 1.0e-25 121.7 173 46.8
Atru.chr10.1050 Acer truncatum HOM05D000321 ORTHO05D000204 1.1e-24 118.2 165 47.3
Aa31LG6G5410 Aethionema arabicum HOM05D000321 ORTHO05D000204 1.5e-24 117.9 174 43.7
ATR1098G123 Amborella trichopoda HOM05D000321 ORTHO05D000204 4.3e-24 116.3 172 41.9
Haze_05698 Corylus avellana HOM05D000321 ORTHO05D000204 1.2e-23 114.8 173 45.1
QL05p054777 Quercus lobata HOM05D000321 ORTHO05D000204 2.1e-23 114.0 190 38.4
Zm00001eb117590 Zea mays HOM05D000321 ORTHO05D000204 2.8e-23 113.6 174 40.2
SalBow8G3537 Salvia bowleyana HOM05D000321 ORTHO05D000204 2.6e-21 107.1 185 41.6
CANSAT35G0687 Cannabis sativa HOM05D000321 ORTHO05D000204 3.7e-20 103.2 183 40.4
Os07g0150100 Oryza sativa ssp. japonica HOM05D000321 ORTHO05D000204 4.9e-20 102.8 174 36.2
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 7.1e-19 99.0 87 63.2
SEGI_18685 Sequoiadendron giganteum HOM05D000321 ORTHO05D000204 2.7e-18 97.1 174 34.5
HPP92_001890 Vanilla planifolia HOM05D000321 ORTHO05D000204 1.7e-17 94.4 146 39.7
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.9e-17 93.2 65 72.3
Gohir.A05G146000 Gossypium hirsutum HOM05D000321 ORTHO05D000204 1.9e-16 90.9 62 69.4
Dinv21509 Davidia involucrata HOM05D000321 ORTHO05D000204 1.2e-15 88.2 63 66.7
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 6.2e-15 85.9 128 44.5
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 6.2e-15 85.9 127 55.1
Pp3c11_15540 Physcomitrium patens HOM05D000321 ORTHO05D000204 6.8e-14 82.4 176 33.0
CSS0023032 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 8.9e-14 82.0 123 43.9
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 8.9e-14 82.0 76 59.2
AUR62030128 Chenopodium quinoa HOM05D000321 ORTHO05D000204 1.2e-13 81.6 182 34.1
Pp3c1_13840 Physcomitrium patens HOM05D000321 ORTHO05D000204 1.7e-12 77.8 175 31.4
AagrBONN_evm.TU.Sc2ySwM_117.1843 Anthoceros agrestis HOM05D000321 ORTHO05D000204 3.7e-12 76.6 176 35.2
Psat1g108800 Pisum sativum HOM05D000321 ORTHO05D000204 4.9e-12 76.3 89 44.9
Pp3c7_9820 Physcomitrium patens HOM05D000321 ORTHO05D000204 6.4e-12 75.9 176 30.1
Mapoly0155s0022 Marchantia polymorpha HOM05D000321 ORTHO05D000204 4.1e-11 73.2 185 30.3
FvH4_5g04190 Fragaria vesca HOM05D000321 ORTHO05D000204 5.4e-11 72.8 56 64.3
Psat6g113280 Pisum sativum HOM05D000321 ORTHO05D000204 1.6e-10 71.2 91 41.8
Pp3c9_3190 Physcomitrium patens HOM05D000321 ORTHO05D000204 3.5e-10 70.1 167 29.3
FAN13G0910 Fragaria x ananassa HOM05D000321 ORTHO05D000204 6.0e-10 69.3 56 62.5
FAN13G1245 Fragaria x ananassa HOM05D000321 ORTHO05D000204 6.0e-10 69.3 56 62.5
FAN18G1259 Fragaria x ananassa HOM05D000321 ORTHO05D000204 6.0e-10 69.3 56 62.5
Pp3c12_18380 Physcomitrium patens HOM05D000321 ORTHO05D000204 2.3e-09 67.4 173 28.3
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 3.9e-09 66.6 77 49.4
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 1.1e-08 65.1 66 48.5
arahy.Tifrunner.gnm1.ann1.YS9MQU Arachis hypogaea HOM05D000321 ORTHO05D000204 1.5e-08 64.7 57 57.9
arahy.Tifrunner.gnm1.ann1.8W9MR1 Arachis hypogaea HOM05D000321 ORTHO05D000204 4.3e-08 63.2 57 56.1
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 4.3e-08 63.2 62 50.0
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 4.3e-08 63.2 66 47.0
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.6e-08 62.8 62 50.0
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 5.6e-08 62.8 77 46.8
CBR_g39011 Chara braunii HOM05D000321 ORTHO05D000204 7.3e-08 62.4 177 26.0
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 1.6e-07 61.2 75 48.0
Pp3c3_38100 Physcomitrium patens HOM05D000321 ORTHO05D000204 3.6e-07 60.1 174 25.3
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 4.7e-07 59.7 85 47.1
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 8.1e-07 58.9 136 39.0
Hma1.2p1_0586F.1_g183790 Hydrangea macrophylla HOM05D000321 ORTHO05D000204 1.1e-06 58.5 57 52.6
Pp3c6_25510 Physcomitrium patens HOM05D000321 ORTHO05D000204 1.4e-06 58.2 176 29.0
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 3.1e-06 57.0 92 38.0
Nn3g20304 Nelumbo nucifera HOM05D000321 ORTHO05D000204 5.2e-06 56.2 118 33.9
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 6.8e-06 55.8 61 54.1
Pp3c16_3180 Physcomitrium patens HOM05D000321 ORTHO05D000204 6.8e-06 55.8 176 27.8
CSS0011323 Camellia sinensis var. sinensis HOM05D000321 ORTHO05D000204 8.9e-06 55.5 37 70.3


User provided reference genes

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