Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 2.5e-80 302.0 148 100.0
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.9e-67 259.2 151 87.4
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.9e-67 259.2 151 87.4
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 2.7e-66 255.4 151 86.1
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 2.7e-66 255.4 151 86.1
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 1.3e-63 246.5 141 88.7
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.6e-58 229.6 151 79.5
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 2.7e-58 228.8 151 79.5
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 2.7e-58 228.8 151 79.5
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-57 225.3 151 78.1
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-57 225.3 151 78.1
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-57 225.3 151 78.1
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-57 225.3 151 78.1
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 8.8e-57 223.8 150 76.0
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.3e-56 221.9 150 77.3
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 4.4e-56 221.5 150 76.0
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 4.4e-56 221.5 150 76.0
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.2e-55 219.2 150 76.7
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 2.2e-55 219.2 129 86.0
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 2.8e-55 218.8 150 76.7
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 2.8e-55 218.8 150 76.0
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 8.2e-55 217.2 150 76.0
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.1e-54 216.9 150 76.0
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 1.4e-54 216.5 151 75.5
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.4e-54 215.7 151 75.5
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 2.4e-54 215.7 151 75.5
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 4.1e-54 214.9 150 76.7
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 4.1e-54 214.9 150 76.7
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 5.3e-54 214.5 151 76.2
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 7.0e-54 214.2 150 76.0
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 9.1e-54 213.8 150 75.3
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.2e-53 213.4 150 74.0
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 3.5e-53 211.8 133 83.5
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 3.5e-53 211.8 153 74.5
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 7.7e-53 210.7 150 75.3
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 7.7e-53 210.7 150 75.3
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 7.7e-53 210.7 150 75.3
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 2.2e-52 209.1 150 74.7
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 5.0e-52 208.0 149 73.8
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 6.5e-52 207.6 147 72.8
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 6.5e-52 207.6 150 74.0
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 6.5e-52 207.6 150 74.0
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 2.5e-51 205.7 150 74.0
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 4.2e-51 204.9 159 69.8
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 4.7e-50 201.4 151 71.5
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 2.3e-49 199.1 148 73.0
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 7.5e-48 194.1 139 76.3
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 9.8e-48 193.7 138 75.4
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.2e-47 192.6 139 75.5
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 8.3e-47 190.7 150 69.3
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 4.2e-43 178.3 150 66.7
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.1e-42 176.0 132 73.5
HanXRQChr13g0389471 Helianthus annuus HOM05D002864 ORTHO05D008485 5.2e-41 171.4 89 92.1
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.7e-39 166.4 151 64.2
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 6.3e-39 164.5 125 74.4
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.4e-38 163.3 125 72.0
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 2.4e-38 162.5 133 69.9
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 9.2e-38 160.6 111 75.7
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.9e-35 152.9 98 82.7
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.3e-31 140.2 110 70.0
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 1.2e-29 133.7 103 67.0
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 5.0e-28 128.3 142 55.6
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 6.6e-28 127.9 151 47.0
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.5e-27 126.7 148 54.1
ClCG06G009270 Citrullus lanatus HOM05D002864 ORTHO05D008485 4.3e-27 125.2 96 68.8
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 2.8e-26 122.5 141 51.1
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.1e-25 120.6 142 52.8
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 2.9e-23 112.5 143 47.6
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.9e-23 112.5 143 47.6
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.9e-23 112.5 143 47.6
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 2.9e-23 112.5 143 47.6
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.7e-21 105.9 97 58.8
arahy.Tifrunner.gnm1.ann1.G1F49J Arachis hypogaea HOM05D002864 ORTHO05D008485 7.5e-16 87.8 55 78.2
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.2e-15 86.3 89 57.3
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.9e-15 85.1 89 56.2
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 5.4e-14 81.6 62 64.5
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 4.6e-13 78.6 89 53.9
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.0e-12 77.4 89 52.8
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 1.3e-12 77.0 63 68.3
Solyc11g043190.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 1.3e-12 77.0 50 74.0
CAN.G1439.9 Capsicum annuum HOM05D002864 ORTHO05D008485 3.0e-12 75.9 49 71.4
ClCG02G008120 Citrullus lanatus HOM05D002864 ORTHO05D008485 6.6e-12 74.7 54 75.9
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 5.6e-11 71.6 48 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 1.2e-10 70.5 146 34.2
Nitab4.5_0024895g0040 Nicotiana tabacum HOM05D002864 ORTHO05D008485 1.1e-09 67.4 55 65.5
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 4.4e-08 62.0 46 69.6
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 5.8e-08 61.6 48 66.7
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.8e-08 61.6 48 64.6
Nitab4.5_0000317g0150 Nicotiana tabacum HOM05D002578 ORTHO05D002698 5.8e-08 61.6 41 68.3
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 5.8e-08 61.6 42 73.8
Solyc01g049950.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 9.9e-08 60.8 56 66.1
ECA240G4469 Erigeron canadensis HOM05D000041 ORTHO05D015639 4.9e-07 58.5 55 50.9
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 2.4e-06 56.2 37 75.7
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 3.2e-06 55.8 37 78.4
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 3.2e-06 55.8 37 78.4
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 3.2e-06 55.8 37 78.4
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 5.4e-06 55.1 37 75.7
MELO3C031088.2 Cucumis melo HOM05D002864 ORTHO05D008485 7.1e-06 54.7 40 62.5


User provided reference genes

Program Settings