Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 6.1e-144 514.2 278 100.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.6e-86 322.8 213 85.4
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.6e-80 303.5 212 83.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 4.8e-72 275.4 214 77.1
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-68 264.2 212 74.5
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 3.2e-68 262.7 212 74.5
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 3.6e-67 259.2 212 73.1
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.3e-65 252.7 226 68.6
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 5.7e-65 251.9 213 71.4
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.8e-64 249.6 213 72.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 8.2e-64 248.1 200 74.0
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 8.2e-64 248.1 211 72.0
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.1e-63 247.7 212 68.9
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.4e-63 246.5 212 68.9
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.4e-63 246.5 211 72.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 9.1e-63 244.6 212 71.7
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.5e-62 242.3 210 68.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.9e-62 241.9 215 71.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-61 241.1 215 69.3
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.7e-61 240.4 218 70.6
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 3.8e-61 239.2 213 67.6
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.0e-61 238.8 220 66.4
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 8.5e-61 238.0 223 64.1
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 8.5e-61 238.0 213 69.5
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 8.5e-61 238.0 213 69.5
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 2.5e-60 236.5 213 68.5
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 5.5e-60 235.3 215 65.1
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 7.2e-60 235.0 215 65.6
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.2e-59 234.2 214 66.4
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.6e-59 233.8 213 69.5
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.1e-59 233.4 219 66.2
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 2.7e-59 233.0 217 66.8
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 6.1e-59 231.9 211 68.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.0e-58 231.1 224 65.6
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.0e-58 231.1 223 63.7
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.0e-58 231.1 223 63.7
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.0e-58 229.6 216 63.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.0e-58 229.6 226 64.6
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.1e-58 228.8 213 68.1
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.1e-57 227.6 210 65.7
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.0e-57 226.9 211 64.9
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.0e-57 226.9 210 63.8
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.0e-57 226.9 211 64.5
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.6e-57 226.5 223 64.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 3.3e-57 226.1 235 63.0
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 4.4e-57 225.7 231 63.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.7e-57 224.6 251 53.4
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 9.7e-57 224.6 212 67.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.3e-56 224.2 226 61.9
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.8e-56 223.0 224 64.3
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 6.3e-56 221.9 245 59.6
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 6.3e-56 221.9 245 59.6
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.4e-55 220.7 216 66.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.8e-55 220.3 229 59.4
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.8e-55 220.3 229 59.4
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.1e-55 219.5 233 58.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.1e-55 219.5 221 64.7
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 3.1e-55 219.5 194 68.0
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.1e-55 219.5 213 63.4
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 3.1e-55 219.5 206 68.4
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 5.3e-55 218.8 216 63.9
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 5.3e-55 218.8 127 88.2
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 9.1e-55 218.0 208 68.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.1e-55 218.0 229 61.1
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-54 217.6 229 59.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.0e-54 216.9 170 75.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.0e-54 216.9 235 59.6
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.0e-54 216.9 240 55.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.0e-54 216.9 126 88.1
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.5e-54 216.1 215 62.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 3.5e-54 216.1 210 64.8
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 3.5e-54 216.1 218 63.8
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 4.5e-54 215.7 127 88.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.5e-54 215.7 239 58.6
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 1.0e-53 214.5 126 87.3
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.3e-53 214.2 210 66.2
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.2e-53 213.4 224 62.9
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.9e-53 213.0 217 64.1
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.9e-53 213.0 217 60.8
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 8.5e-53 211.5 255 58.8
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.1e-52 211.1 232 58.6
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.9e-52 210.3 126 86.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.9e-52 210.3 235 58.3
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 2.5e-52 209.9 252 58.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.6e-51 207.2 212 65.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.1e-51 206.8 215 57.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.7e-51 205.7 210 62.9
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 6.1e-51 205.3 210 64.3
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 8.0e-51 204.9 210 64.8
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 8.0e-51 204.9 212 64.2
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.0e-50 204.5 127 83.5
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 3.0e-50 203.0 207 64.3
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.9e-50 202.6 220 61.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 6.7e-50 201.8 198 62.1
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 5.7e-49 198.7 124 83.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 9.7e-49 198.0 221 60.6
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 4.8e-48 195.7 218 59.2
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 6.3e-48 195.3 218 58.7
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.3e-48 195.3 215 60.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-47 194.1 127 78.7
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 7.0e-47 191.8 254 54.7
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-46 191.0 210 59.5
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.2e-46 191.0 228 55.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.6e-46 190.7 215 59.1
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.6e-46 190.7 190 66.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 5.9e-46 188.7 221 57.9
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.3e-45 187.6 211 59.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.7e-45 187.2 208 58.7
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.7e-45 187.2 208 58.7
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.2e-45 186.8 208 58.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.1e-44 184.5 106 91.5
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.5e-44 184.1 217 58.5
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.9e-44 183.7 207 54.1
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 3.2e-44 183.0 208 58.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 4.2e-44 182.6 216 53.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 7.2e-44 181.8 109 88.1
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.7e-43 179.9 207 54.6
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.5e-41 174.1 211 51.2
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.1e-39 167.9 169 66.3
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.1e-39 166.4 101 89.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 7.0e-39 165.2 125 71.2
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.6e-38 164.1 196 58.7
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.5e-38 162.5 211 52.1
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 6.5e-37 158.7 95 82.1
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 6.5e-37 158.7 128 68.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.2e-36 156.0 198 57.6
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 7.2e-36 155.2 126 62.7
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-34 151.4 213 50.2
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-34 151.0 204 52.9
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.8e-34 150.6 109 75.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 6.8e-34 148.7 109 71.6
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 8.8e-34 148.3 113 70.8
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.0e-33 147.1 125 63.2
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.6e-33 146.7 200 49.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.6e-33 146.7 200 49.0
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 9.1e-31 138.3 227 50.7
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.2e-30 137.9 172 57.0
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-30 137.5 133 59.4
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.6e-30 137.5 225 46.7
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.6e-30 137.5 210 48.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 5.9e-30 135.6 213 44.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 4.2e-28 129.4 115 65.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-27 126.3 128 57.8
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 8.0e-27 125.2 103 59.2
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 5.2e-26 122.5 138 59.4
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.9e-24 115.9 136 59.6
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 5.4e-23 112.5 148 52.7
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-22 111.3 82 74.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-20 104.8 79 69.6
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.8e-19 100.1 162 48.1
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 2.0e-14 84.0 109 58.7
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.5e-14 83.2 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.7e-13 80.9 115 41.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.9e-12 77.4 65 61.5
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 5.6e-12 75.9 108 56.5
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.6e-11 74.3 120 39.2
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 3.1e-10 70.1 149 45.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 6.8e-10 68.9 41 75.6
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 8.9e-10 68.6 94 46.8
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.2e-09 68.2 106 47.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-08 63.5 37 78.4
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 4.6e-06 56.2 46 65.2


User provided reference genes

Program Settings