Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 3348.9 1738 100.0
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2718.0 1787 82.7
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2435.2 1908 71.8
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2345.1 1895 68.5
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2334.3 1811 71.1
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2320.0 1897 68.6
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2318.9 1894 68.6
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 2305.4 1338 88.6
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2287.3 1869 67.8
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2285.8 1852 69.5
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2279.2 1890 67.6
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2276.1 1893 68.0
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2274.6 1862 69.0
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2272.7 1885 66.9
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2269.6 1887 67.1
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2260.3 1891 67.3
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2260.3 1922 66.8
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2260.0 1879 67.4
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2254.6 1833 68.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2254.2 1849 66.7
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2248.0 1870 67.0
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2241.1 1863 66.7
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2237.6 1890 66.7
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2236.5 1890 65.6
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2229.1 1884 66.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2227.6 1812 68.1
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2222.6 1892 65.9
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2221.0 1897 65.9
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2219.5 1895 66.2
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2216.8 1890 66.0
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2215.3 1881 66.3
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2214.9 1801 68.5
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2212.6 1908 64.4
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2202.6 1887 65.6
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2198.3 1875 66.1
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2195.6 1879 65.5
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2188.7 1869 65.4
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2187.1 1901 65.1
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2182.5 1874 66.3
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2179.4 1889 65.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2179.1 1874 66.5
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2176.0 1870 67.0
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2167.1 1921 64.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2160.2 1884 64.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2157.9 1887 64.5
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2152.9 1881 64.5
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2141.7 1972 63.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2136.7 1876 63.9
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2135.1 2106 59.8
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2134.8 1903 64.6
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2128.6 1912 64.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2126.3 1863 64.4
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2125.5 1704 68.6
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2112.4 1874 63.0
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2100.9 1854 64.1
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2090.1 1818 64.8
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2088.9 1843 63.6
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2086.6 1820 63.7
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2080.8 1901 61.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2078.1 1831 62.8
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2075.4 1828 64.4
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2065.0 2215 55.2
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2062.0 1873 63.5
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2060.8 1827 63.8
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2057.3 1726 66.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2057.0 1824 63.0
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2051.2 1818 64.0
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2047.3 2085 59.4
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2045.8 1734 67.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2045.4 1875 62.0
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2045.4 1725 67.9
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2042.3 1871 64.0
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2040.8 1837 63.0
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2037.7 1879 62.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2036.5 1827 63.3
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2036.2 1821 63.2
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2035.8 1838 63.4
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2011.1 1875 62.4
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 1999.6 1889 61.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1993.4 1873 62.0
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1992.2 1865 60.6
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1986.5 1879 61.8
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1977.2 1805 62.9
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1976.4 1843 62.2
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1961.0 1879 61.5
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1927.1 1819 61.2
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1890.9 1779 62.2
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1805.0 1782 56.8
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1746.1 1482 68.4
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1739.5 1985 52.2
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1738.8 1512 66.1
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1716.4 1968 52.5
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1614.0 1562 56.8
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1600.9 1817 53.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1596.3 1814 52.5
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1434.1 935 77.3
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1390.9 1052 71.5
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1297.3 1251 62.2
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1285.0 1275 61.7
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1275.8 1208 64.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1260.0 1428 53.6
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1248.4 1156 64.0
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1200.3 847 71.3
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1142.1 943 65.4
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 4.5e-301 1038.9 1285 44.9
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 7.9e-282 974.9 673 73.3
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 3.8e-276 956.1 658 75.1
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.0e-269 933.7 1112 55.8
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 2.0e-261 907.1 1098 55.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 7.1e-222 775.8 1308 38.1
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-208 731.1 1032 46.9
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.3e-199 701.8 920 53.8
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 8.4e-199 699.1 828 58.2
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 4.6e-197 693.3 446 79.8
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 9.4e-174 615.9 369 82.7
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 3.0e-156 557.8 1349 32.2
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.4e-155 553.9 366 77.9
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.7e-143 515.4 367 73.8
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.6e-141 507.7 363 69.4
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.2e-109 402.9 494 49.8
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 2.6e-107 395.2 286 69.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 1.3e-90 339.7 292 61.6
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 2.2e-90 339.0 214 78.0
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 4.6e-88 331.3 1401 24.6
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.5e-86 326.2 237 73.0
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.4e-84 318.9 198 81.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.0e-83 315.8 260 66.5
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 2.4e-76 292.4 1632 24.9
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 3.0e-71 275.4 222 69.8
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 4.8e-69 268.1 264 56.1
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.2e-64 253.4 511 45.8
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 1.5e-62 246.5 170 68.8
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.4e-52 213.4 235 51.1
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 6.9e-52 211.1 245 52.7
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.5e-51 209.9 190 58.9
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 2.0e-51 209.5 167 61.7
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.4e-51 208.8 486 33.1
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.5e-51 208.4 463 39.7
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.5e-50 204.1 273 49.1
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 4.2e-49 201.8 185 54.6
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.2e-43 183.7 319 47.0
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.2e-41 175.3 218 50.0
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 4.8e-37 161.8 89 84.3
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 7.0e-36 157.9 106 74.5
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 8.3e-29 134.4 110 69.1
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 4.5e-27 128.6 75 89.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 1.0e-26 127.5 105 69.5
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.3e-26 127.1 100 66.0
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 3.2e-25 122.5 87 65.5
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.2e-24 120.6 69 89.9
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 3.4e-22 112.5 61 88.5
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 3.7e-21 109.0 75 77.3
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.4e-20 106.3 156 47.4
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.0e-19 103.2 131 51.9
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.5e-19 102.4 82 58.5
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.1e-17 97.4 91 60.4
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 4.2e-17 95.5 128 46.1
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-16 94.0 58 79.3
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-16 94.0 58 79.3
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.6e-16 93.6 88 53.4
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-15 90.9 58 77.6
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 1.1e-12 80.9 41 90.2
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 1.6e-11 77.0 36 94.4
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 5.9e-11 75.1 73 54.8
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 5.9e-11 75.1 50 80.0
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 2.3e-10 73.2 66 62.1
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 3.0e-10 72.8 53 66.0
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 6.6e-10 71.6 48 68.8
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 4.3e-09 68.9 85 43.5
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 4.3e-09 68.9 86 48.8
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 2.3e-07 63.2 32 84.4
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-06 59.7 59 54.2


User provided reference genes

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