Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.5e-167 592.8 315 100.0
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 5.0e-17 92.8 234 34.6
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 9.4e-16 88.6 225 33.3
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 9.4e-16 88.6 225 32.9
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 1.6e-15 87.8 225 33.3
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 1.6e-15 87.8 240 32.9
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.6e-15 87.8 225 33.8
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.6e-15 87.8 225 33.8
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.6e-15 87.8 262 31.3
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 1.6e-15 87.8 225 33.3
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 2.1e-15 87.4 225 33.3
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 2.1e-15 87.4 247 32.0
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 2.1e-15 87.4 225 33.3
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.7e-15 87.0 225 33.8
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 2.7e-15 87.0 191 35.1
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.7e-15 87.0 225 33.8
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 2.7e-15 87.0 225 32.9
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 3.6e-15 86.7 225 32.9
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 3.6e-15 86.7 225 33.3
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.6e-15 86.7 225 33.3
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.6e-15 86.7 225 33.3
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 4.7e-15 86.3 225 32.9
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 4.7e-15 86.3 225 32.9
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.7e-15 86.3 240 32.1
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.7e-15 86.3 240 32.1
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.7e-15 86.3 225 32.9
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 6.1e-15 85.9 225 32.9
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 6.1e-15 85.9 225 32.9
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 6.1e-15 85.9 191 35.6
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 6.1e-15 85.9 191 35.1
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 6.1e-15 85.9 191 35.1
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 6.1e-15 85.9 240 32.1
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 6.1e-15 85.9 240 32.1
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 6.1e-15 85.9 240 32.1
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 8.0e-15 85.5 225 32.0
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 1.0e-14 85.1 225 32.9
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.0e-14 85.1 225 32.9
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.0e-14 85.1 225 32.9
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 1.0e-14 85.1 191 34.6
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.4
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.0
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.0
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.9
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.4
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.4
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.4
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.4e-14 84.7 225 32.4
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.8e-14 84.3 206 34.0
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.8e-14 84.3 225 32.4
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 1.8e-14 84.3 225 32.4
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.8e-14 84.3 191 35.1
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 1.8e-14 84.3 191 35.1
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 1.8e-14 84.3 225 32.9
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.3e-14 84.0 225 32.0
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 2.3e-14 84.0 225 32.0
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 2.3e-14 84.0 225 32.0
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 2.3e-14 84.0 225 32.4
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.3e-14 84.0 232 32.3
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 2.3e-14 84.0 225 32.4
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 3.0e-14 83.6 225 32.0
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.0e-14 83.6 232 31.9
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.0e-14 83.6 232 31.9
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.0e-14 83.6 211 33.2
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.0e-14 83.6 191 34.6
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 3.0e-14 83.6 225 32.0
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 3.0e-14 83.6 225 32.0
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 4.0e-14 83.2 225 31.6
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 4.0e-14 83.2 225 31.6
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 4.0e-14 83.2 225 31.6
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 4.0e-14 83.2 225 31.1
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 4.0e-14 83.2 225 32.4
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 4.0e-14 83.2 191 34.0
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 5.2e-14 82.8 240 30.4
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 5.2e-14 82.8 191 34.6
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 5.2e-14 82.8 206 32.5
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 6.7e-14 82.4 225 32.0
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 6.7e-14 82.4 225 32.4
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 6.7e-14 82.4 230 32.2
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 8.8e-14 82.0 191 34.0
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 8.8e-14 82.0 225 31.6
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 8.8e-14 82.0 225 32.4
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 8.8e-14 82.0 225 32.4
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 8.8e-14 82.0 225 32.4
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 8.8e-14 82.0 191 34.6
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 8.8e-14 82.0 225 31.6
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 8.8e-14 82.0 225 31.6
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.2e-13 81.6 225 31.1
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 1.2e-13 81.6 228 31.1
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.5e-13 81.3 225 32.0
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.5e-13 81.3 225 31.1
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.5e-13 81.3 225 31.1
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 2.0e-13 80.9 191 34.0
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 2.0e-13 80.9 225 30.7
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 2.0e-13 80.9 191 33.5
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.6e-13 80.5 191 34.0
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.3e-13 80.1 225 32.0
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 4.4e-13 79.7 225 31.1
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.7e-13 79.3 225 31.1
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 5.7e-13 79.3 206 32.5
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 7.5e-13 79.0 225 31.1
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 7.5e-13 79.0 225 31.1
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 9.7e-13 78.6 206 32.5
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.2e-12 77.4 194 33.0
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.4e-11 74.7 225 30.2
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 1.8e-11 74.3 43 88.4
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.3e-11 72.8 77 54.5
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 7.0e-11 72.4 206 30.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 2.0e-10 70.9 43 79.1
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 5.9e-10 69.3 64 53.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 7.7e-10 68.9 112 46.4
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.7e-09 67.8 257 26.8
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 1.7e-09 67.8 43 81.4
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 5.0e-09 66.2 78 55.1
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 5.0e-09 66.2 257 26.5
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 8.5e-09 65.5 82 48.8
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 2.5e-08 63.9 43 79.1
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.2e-08 63.5 39 79.5
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 5.5e-08 62.8 43 69.8
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 9.4e-08 62.0 39 74.4
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.6e-07 61.2 43 67.4
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 2.7e-07 60.5 67 58.2
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 4.7e-07 59.7 39 71.8
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 6.1e-07 59.3 57 61.4
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 8.0e-07 58.9 39 69.2
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 3.0e-06 57.0 45 66.7


User provided reference genes

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