Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0376311 Helianthus annuus HOM05D000849 ORTHO05D006066 1.9e-62 242.3 120 100.0
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.7e-13 79.7 39 94.9
HanXRQChr16g0505661 Helianthus annuus HOM05D000849 ORTHO05D006066 5.4e-12 74.7 37 94.6
CSS0006953 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D006066 1.2e-11 73.6 37 91.9
ECA236G1123 Erigeron canadensis HOM05D000849 ORTHO05D006066 2.0e-11 72.8 36 91.7
CSS0007212 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D006066 3.5e-11 72.0 37 89.2
Dinv23518 Davidia involucrata HOM05D000849 ORTHO05D006066 3.5e-11 72.0 37 89.2
Lj5A196T51 Lonicera japonica HOM05D000849 ORTHO05D006066 5.9e-11 71.2 37 86.5
Hma1.2p1_0633F.1_g192530 Hydrangea macrophylla HOM05D000849 ORTHO05D006066 7.7e-11 70.9 37 86.5
Hma1.2p1_1375F.1_g279072 Hydrangea macrophylla HOM05D000849 ORTHO05D006066 7.7e-11 70.9 37 86.5
Lsat_1_v5_gn_7_89260 Lactuca sativa HOM05D000849 ORTHO05D006066 1.7e-10 69.7 37 83.8
Actinidia00526 Actinidia chinensis HOM05D000849 ORTHO05D006066 2.9e-10 68.9 37 81.1
Rhsim11G0177500 Rhododendron simsii HOM05D000849 ORTHO05D006066 3.8e-10 68.6 37 86.5
Haze_15088 Corylus avellana HOM05D000849 ORTHO05D006066 5.0e-10 68.2 47 63.8
DCAR_022975 Daucus carota HOM05D000849 ORTHO05D006066 5.0e-10 68.2 37 86.5
Nn5g29613 Nelumbo nucifera HOM05D000849 ORTHO05D006066 8.6e-10 67.4 40 72.5
SEGI_16743 Sequoiadendron giganteum HOM05D000849 ORTHO05D006066 1.1e-09 67.0 37 81.1
Atru.chr3.572 Acer truncatum HOM05D000849 ORTHO05D006066 2.5e-09 65.9 38 73.7
Sed0018673 Sechium edule HOM05D000849 ORTHO05D006066 3.3e-09 65.5 37 75.7
CANSAT01G0485 Cannabis sativa HOM05D000849 ORTHO05D006066 4.2e-09 65.1 37 81.1
unitig_8.g3431 Utricularia gibba HOM05D000849 ORTHO05D006066 4.2e-09 65.1 52 57.7
Cc02_g17550 Coffea canephora HOM05D000849 ORTHO05D006066 5.5e-09 64.7 52 59.6
RcHm_v2.0_Chr2g0101121 Rosa chinensis HOM05D000849 ORTHO05D006066 5.5e-09 64.7 37 75.7
RcHm_v2.0_Chr2g0101561 Rosa chinensis HOM05D000849 ORTHO05D006066 5.5e-09 64.7 37 75.7
Aqoxy6G01117 Aquilegia oxysepala HOM05D000849 ORTHO05D006066 7.2e-09 64.3 37 75.7
CAN.G1412.9 Capsicum annuum HOM05D000849 ORTHO05D006066 7.2e-09 64.3 52 55.8
Migut.N01240 Erythranthe guttata HOM05D000849 ORTHO05D006066 9.5e-09 63.9 52 53.8
TAR628G0662 Trochodendron aralioides HOM05D000849 ORTHO05D006066 9.5e-09 63.9 37 75.7
MSTRG.27698 Avicennia marina HOM05D000849 ORTHO05D006066 1.2e-08 63.5 36 77.8
Cfa004308 Carpinus fangiana HOM05D000849 ORTHO05D006066 1.2e-08 63.5 37 73.0
MD15G1261700 Malus domestica HOM05D000849 ORTHO05D006066 1.2e-08 63.5 37 73.0
MELO3C016632.2 Cucumis melo HOM05D000849 ORTHO05D006066 1.6e-08 63.2 37 70.3
CsaV3_5G037100 Cucumis sativus L. HOM05D000849 ORTHO05D006066 1.6e-08 63.2 37 70.3
SalBow3G1791 Salvia bowleyana HOM05D000849 ORTHO05D006066 1.6e-08 63.2 36 75.0
Solyc01g109640.3 Solanum lycopersicum HOM05D000849 ORTHO05D006066 1.6e-08 63.2 52 53.8
Sopen01g051830 Solanum pennellii HOM05D000849 ORTHO05D006066 1.6e-08 63.2 52 53.8
TWI73G0497 Tripterygium wilfordii HOM05D000849 ORTHO05D006066 1.6e-08 63.2 37 70.3
Eucgr.I02443 Eucalyptus grandis HOM05D000849 ORTHO05D006066 2.1e-08 62.8 39 66.7
Prupe.7G154700 Prunus persica HOM05D000849 ORTHO05D006066 2.1e-08 62.8 37 75.7
HPP92_023609 Vanilla planifolia HOM05D000849 ORTHO05D006066 2.1e-08 62.8 37 75.7
GSVIVG01018959001 Vitis vinifera HOM05D000849 ORTHO05D006066 2.1e-08 62.8 37 75.7
Ciclev10026648m.g Citrus clementina HOM05D000849 ORTHO05D006066 2.8e-08 62.4 37 70.3
LjContig00448g0000683 Lotus japonicus HOM05D000849 ORTHO05D006066 2.8e-08 62.4 36 75.0
PGR119G1873 Punica granatum HOM05D000849 ORTHO05D006066 2.8e-08 62.4 36 75.0
Psat0s3288g0080 Pisum sativum HOM05D000849 ORTHO05D006066 3.6e-08 62.0 36 75.0
PSO675G4482 Papaver somniferum HOM05D000849 ORTHO05D006066 4.7e-08 61.6 37 73.0
Ah.03g140870 Amaranthus hybridus HOM05D000849 ORTHO05D006066 6.1e-08 61.2 36 77.8
THA.LOC104819207 Tarenaya hassleriana HOM05D000849 ORTHO05D006066 8.0e-08 60.8 36 72.2
EL10Ac6g15560 Beta vulgaris HOM05D000849 ORTHO05D006066 1.0e-07 60.5 36 75.0
FvH4_1g13290 Fragaria vesca HOM05D000849 ORTHO05D006066 1.0e-07 60.5 36 72.2
FAN19G2393 Fragaria x ananassa HOM05D000849 ORTHO05D006066 1.0e-07 60.5 36 72.2
FAN23G2560 Fragaria x ananassa HOM05D000849 ORTHO05D006066 1.0e-07 60.5 36 72.2
Gorai.003G014900 Gossypium raimondii HOM05D000849 ORTHO05D006066 1.0e-07 60.5 37 70.3
QL06p046096 Quercus lobata HOM05D000849 ORTHO05D006066 1.0e-07 60.5 37 70.3
Medtr8g077600 Medicago truncatula HOM05D000849 ORTHO05D006066 1.8e-07 59.7 36 72.2
Sc07g0000400 Simmondsia chinensis HOM05D000849 ORTHO05D006066 1.8e-07 59.7 36 72.2
Gohir.D03G014601 Gossypium hirsutum HOM05D000849 ORTHO05D006066 2.3e-07 59.3 37 67.6
Lsat_1_v5_gn_3_76381 Lactuca sativa HOM05D000849 ORTHO05D006066 2.3e-07 59.3 41 63.4
Potri.007G025400 Populus trichocarpa HOM05D000849 ORTHO05D006066 2.3e-07 59.3 52 51.9
AL5G31210 Arabidopsis lyrata HOM05D000849 ORTHO05D006066 3.0e-07 58.9 36 69.4
Carub.0005s1725 Capsella rubella HOM05D000849 ORTHO05D006066 3.0e-07 58.9 36 69.4
CiPaw.01G038200 Carya illinoinensis HOM05D000849 ORTHO05D006066 3.0e-07 58.9 37 70.3
Phvul.003G073000 Phaseolus vulgaris HOM05D000849 ORTHO05D006066 3.0e-07 58.9 36 69.4
Phvul.003G253500 Phaseolus vulgaris HOM05D000849 ORTHO05D006066 3.0e-07 58.9 36 69.4
VMungo0251G1363 Vigna mungo HOM05D000849 ORTHO05D006066 3.0e-07 58.9 36 69.4
CDE04G2710 Ceratophyllum demersum HOM05D000849 ORTHO05D006066 4.0e-07 58.5 37 64.9
MD02G1147400 Malus domestica HOM05D000849 ORTHO05D006066 4.0e-07 58.5 37 67.6
PSO541G1912 Papaver somniferum HOM05D000849 ORTHO05D006066 4.0e-07 58.5 37 70.3
AT3G50860 Arabidopsis thaliana HOM05D000849 ORTHO05D006066 5.2e-07 58.2 36 69.4
Thecc.01G035700 Theobroma cacao HOM05D000849 ORTHO05D006066 5.2e-07 58.2 36 69.4
CAN.G358.92 Capsicum annuum HOM05D000849 ORTHO05D006066 6.8e-07 57.8 55 52.7
Cpa.g.sc6.113 Carica papaya HOM05D000849 ORTHO05D006066 6.8e-07 57.8 36 69.4
Duzib147G1012 Durio zibethinus HOM05D000849 ORTHO05D006066 6.8e-07 57.8 36 69.4
Gohir.A02G165400 Gossypium hirsutum HOM05D000849 ORTHO05D006066 6.8e-07 57.8 37 64.9
HanXRQChr16g0530431 Helianthus annuus HOM05D000849 ORTHO05D006066 6.8e-07 57.8 41 65.9
Potri.005G122900 Populus trichocarpa HOM05D000849 ORTHO05D006066 6.8e-07 57.8 37 64.9
Hund13976 Selenicereus undatus HOM05D000849 ORTHO05D006066 8.9e-07 57.4 36 69.4
BcaC06g33326 Brassica carinata HOM05D000849 ORTHO05D006066 1.2e-06 57.0 36 66.7
Thhalv10010773m.g Eutrema salsugineum HOM05D000849 ORTHO05D006066 1.2e-06 57.0 36 66.7
Solyc02g085240.4 Solanum lycopersicum HOM05D000849 ORTHO05D006066 1.2e-06 57.0 36 69.4
Sopen02g029940 Solanum pennellii HOM05D000849 ORTHO05D006066 1.2e-06 57.0 36 69.4
Aa31LG4G18960 Aethionema arabicum HOM05D000849 ORTHO05D006066 1.5e-06 56.6 36 66.7
BcaC06g33077 Brassica carinata HOM05D000849 ORTHO05D006066 1.5e-06 56.6 36 66.7
A03p47980 Brassica napus HOM05D000849 ORTHO05D006066 1.5e-06 56.6 36 66.7
C07p45980 Brassica napus HOM05D000849 ORTHO05D006066 1.5e-06 56.6 36 66.7
BolC7t45117H Brassica oleracea HOM05D000849 ORTHO05D006066 1.5e-06 56.6 36 66.7
Sabra07G0022500 Salix brachista HOM05D000849 ORTHO05D006066 1.5e-06 56.6 52 50.0
Sp5g11360 Schrenkiella parvula HOM05D000849 ORTHO05D006066 1.5e-06 56.6 36 66.7
Manes.01G136100 Manihot esculenta HOM05D000849 ORTHO05D006066 2.0e-06 56.2 37 64.9
Peaxi162Scf00016g00740 Petunia axillaris HOM05D000849 ORTHO05D006066 2.0e-06 56.2 28 85.7
AUR62004053 Chenopodium quinoa HOM05D000849 ORTHO05D006066 2.6e-06 55.8 36 69.4
Lalb_Chr09g0333531 Lupinus albus HOM05D000849 ORTHO05D006066 2.6e-06 55.8 36 66.7
Nitab4.5_0000178g0090 Nicotiana tabacum HOM05D000849 ORTHO05D006066 2.6e-06 55.8 36 66.7
Nitab4.5_0001385g0040 Nicotiana tabacum HOM05D000849 ORTHO05D006066 2.6e-06 55.8 36 66.7
CARHR160410 Cardamine hirsuta HOM05D000849 ORTHO05D006066 7.5e-06 54.3 36 63.9
Glyma.02G056900 Glycine max HOM05D000849 ORTHO05D006066 7.5e-06 54.3 36 63.9


User provided reference genes

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