Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 2.7e-250 868.6 596 100.0
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 7.9e-181 637.9 513 81.3
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.4e-137 494.2 517 60.3
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 6.3e-130 468.8 508 65.2
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 2.0e-115 420.6 522 55.9
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 4.9e-114 416.0 506 54.2
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.4e-113 414.5 511 54.4
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.2e-113 413.3 530 58.3
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 4.6e-112 409.5 506 64.6
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 8.6e-111 405.2 493 53.1
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 1.6e-109 401.0 543 52.9
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.1e-108 396.7 506 53.2
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.2e-106 390.6 584 54.3
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.7e-106 389.8 557 51.9
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 4.9e-106 389.4 515 45.2
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 8.3e-106 388.7 502 51.0
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.4e-105 387.1 565 45.1
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.4e-105 386.0 550 54.5
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 6.0e-104 382.5 496 53.4
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 6.6e-103 379.0 564 45.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.1e-102 378.3 501 50.3
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 1.1e-102 378.3 618 43.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 3.3e-102 376.7 560 49.1
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 5.6e-102 375.9 569 49.4
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 5.2e-100 369.4 514 53.7
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 8.9e-100 368.6 565 47.4
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 5.8e-99 365.9 522 52.1
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 7.6e-99 365.5 615 46.0
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 1.3e-98 364.8 612 43.8
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 3.7e-98 363.2 543 47.9
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.9e-97 360.9 495 57.6
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.2e-96 358.2 597 52.9
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 2.1e-96 357.5 584 47.4
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 4.6e-96 356.3 529 46.5
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 4.6e-96 356.3 504 61.9
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.0e-95 355.1 543 53.8
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 1.3e-95 354.8 536 54.3
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.0e-95 353.6 541 55.6
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.5e-94 351.3 501 53.5
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.5e-94 351.3 503 61.4
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.9e-94 350.9 546 46.3
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.9e-94 350.9 598 52.3
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 3.3e-94 350.1 502 59.8
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.3e-94 350.1 502 59.8
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 6.2e-93 345.9 583 48.7
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 8.1e-93 345.5 493 50.1
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 8.1e-93 345.5 543 44.0
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 8.1e-93 345.5 513 54.8
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.4e-92 344.7 516 58.5
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 3.1e-92 343.6 488 49.8
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 6.8e-92 342.4 559 49.9
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.2e-91 341.7 498 54.6
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 2.0e-91 340.9 514 54.3
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.0e-91 340.9 542 51.1
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.4e-91 340.1 597 53.6
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.9e-91 338.6 539 56.2
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 6.4e-90 335.9 571 51.1
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 6.4e-90 335.9 519 55.9
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 6.4e-90 335.9 520 56.3
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 1.1e-89 335.1 549 46.6
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 3.2e-89 333.6 577 45.8
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 4.2e-89 333.2 542 51.5
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 5.4e-89 332.8 520 57.3
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.2e-88 331.6 572 46.5
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.6e-88 331.3 588 48.5
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 6.0e-88 329.3 602 44.9
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.0e-87 328.6 583 41.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.3e-87 328.2 568 55.1
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 1.7e-87 327.8 568 55.3
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 1.7e-87 327.8 563 49.7
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 3.0e-87 327.0 563 49.0
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 8.7e-87 325.5 551 46.3
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.5e-86 324.7 575 48.7
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.5e-86 324.7 532 47.2
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 4.3e-86 323.2 560 49.5
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 1.6e-85 321.2 576 43.4
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 3.6e-85 320.1 566 48.4
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 4.8e-85 319.7 582 45.5
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 3.8e-82 310.1 545 48.1
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 6.4e-82 309.3 656 39.2
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.4e-81 308.1 513 43.1
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.4e-81 308.1 550 52.0
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 2.1e-77 294.3 545 48.6
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.8e-77 293.9 216 67.6
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.8e-77 293.9 512 48.8
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 4.0e-76 290.0 474 46.0
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.0e-75 287.7 215 65.6
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.8e-74 283.5 215 66.5
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 6.4e-74 282.7 219 66.2
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.6e-72 278.1 214 62.6
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.3e-71 275.0 552 47.1
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 3.3e-70 270.4 580 43.3
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 2.4e-68 264.2 630 43.7
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 5.5e-65 253.1 487 44.8
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 3.0e-63 247.3 217 59.4
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 6.2e-61 239.6 213 59.6
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 8.2e-61 239.2 214 59.3
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.1e-60 238.8 188 66.5
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 3.1e-60 237.3 148 74.3
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 2.9e-58 230.7 499 46.7
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 3.8e-58 230.3 149 72.5
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.4e-57 228.4 152 72.4
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 9.3e-57 225.7 177 64.4
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 1.2e-56 225.3 207 60.9
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 1.0e-55 222.2 148 70.3
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.0e-55 222.2 186 59.1
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.0e-55 222.2 159 66.0
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.3e-55 221.9 214 53.7
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-55 221.9 166 64.5
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 2.8e-53 214.2 568 44.0
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 3.7e-53 213.8 213 54.0
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 9.0e-52 209.1 222 53.6
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 1.2e-51 208.8 149 66.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.2e-51 208.8 580 36.4
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 2.0e-51 208.0 158 67.7
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.0e-51 208.0 214 52.3
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 3.2e-49 200.7 473 40.6
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 2.3e-47 194.5 414 39.9
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 4.3e-46 190.3 113 74.3
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 5.7e-46 189.9 113 74.3
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 2.6e-43 181.0 173 58.4
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 7.9e-40 169.5 492 41.5
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 2.8e-37 161.0 196 49.0
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 8.2e-37 159.5 191 60.2
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 3.2e-33 147.5 221 37.6
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-32 145.2 86 74.4
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.6e-32 145.2 86 74.4
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 4.0e-31 140.6 177 56.5
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 4.0e-31 140.6 177 56.5
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 4.8e-29 133.7 213 39.9
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 3.1e-28 131.0 154 60.4
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 4.5e-27 127.1 327 40.4
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 5.9e-27 126.7 129 60.5
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 7.7e-27 126.3 179 54.2
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 7.7e-27 126.3 98 63.3
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.0e-26 125.9 435 33.3
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 8.8e-23 112.8 193 49.2
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.0e-19 101.7 53 81.1
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 5.9e-19 100.1 190 41.1
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 3.2e-17 94.4 104 56.7
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 4.2e-17 94.0 66 63.6
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 5.2e-15 87.0 76 64.5
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 3.7e-13 80.9 106 50.0
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.7e-13 80.9 133 42.1
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.2e-11 75.9 137 35.0
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 2.7e-11 74.7 67 62.7
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 1.1e-09 69.3 64 57.8
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.5e-09 68.9 94 48.9
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 8.0e-08 63.2 92 47.8
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 5.2e-07 60.5 45 66.7


User provided reference genes

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