Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 2.4e-198 695.3 344 100.0
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 9.3e-142 507.3 365 72.9
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 1.1e-139 500.4 352 73.3
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 3.5e-117 425.6 226 88.9
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 1.7e-103 380.2 322 58.4
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 3.8e-103 379.0 249 70.3
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.4e-102 377.1 232 74.1
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 1.0e-100 370.9 332 56.0
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 5.1e-100 368.6 258 66.3
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 6.7e-100 368.2 300 60.3
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.5e-99 367.1 286 61.5
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 4.4e-99 365.5 301 58.8
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 5.7e-99 365.2 240 70.8
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 7.4e-99 364.8 254 66.9
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.3e-98 364.0 294 60.9
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.3e-98 364.0 256 65.2
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 2.2e-98 363.2 288 61.8
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 2.8e-98 362.8 267 63.3
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 4.8e-98 362.1 370 53.5
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 4.8e-98 362.1 296 59.1
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.1e-97 360.9 226 73.9
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.4e-97 360.5 299 60.2
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.8e-97 360.1 228 73.2
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 2.4e-97 359.8 226 73.9
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 4.1e-97 359.0 292 60.6
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 4.1e-97 359.0 283 61.5
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 4.1e-97 359.0 351 51.6
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 5.3e-97 358.6 228 70.6
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.3e-97 358.6 311 56.6
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 1.6e-96 357.1 230 71.7
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 1.6e-96 357.1 230 71.7
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 1.6e-96 357.1 228 71.5
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.6e-96 357.1 288 60.4
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 2.0e-96 356.7 230 71.3
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.0e-96 356.7 290 58.6
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 2.6e-96 356.3 283 59.7
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 3.5e-96 355.9 230 71.3
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 3.5e-96 355.9 230 71.3
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.0e-95 354.4 226 69.0
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 1.3e-95 354.0 307 57.7
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 1.7e-95 353.6 228 70.2
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 2.2e-95 353.2 286 58.7
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.2e-95 353.2 231 69.7
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 2.2e-95 353.2 330 55.2
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.2e-95 353.2 222 71.2
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 8.5e-95 351.3 225 69.8
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 8.5e-95 351.3 228 70.6
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 1.5e-94 350.5 317 56.5
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.9e-94 350.1 226 71.2
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.9e-94 350.1 226 71.2
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 3.2e-94 349.4 272 61.8
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 4.2e-94 349.0 226 70.8
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 4.2e-94 349.0 226 70.8
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 7.2e-94 348.2 225 71.1
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 7.2e-94 348.2 334 53.9
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 9.4e-94 347.8 347 54.2
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 9.4e-94 347.8 302 57.0
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 9.4e-94 347.8 226 71.2
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 2.1e-93 346.7 341 52.2
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 2.7e-93 346.3 285 60.0
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.7e-93 346.3 226 68.1
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 8.0e-93 344.7 229 69.4
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 1.0e-92 344.4 351 51.3
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 1.0e-92 344.4 345 52.5
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.4e-92 344.0 299 57.5
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 1.4e-92 344.0 254 64.6
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 2.3e-92 343.2 225 70.7
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 4.0e-92 342.4 226 68.6
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 6.7e-92 341.7 282 58.9
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 6.7e-92 341.7 279 60.2
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 8.8e-92 341.3 288 58.7
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 1.1e-91 340.9 278 59.7
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.5e-91 340.5 282 58.9
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 2.0e-91 340.1 226 69.9
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 7.5e-91 338.2 247 64.8
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.7e-90 337.0 236 63.1
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.7e-90 337.0 227 68.3
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 2.8e-90 336.3 236 63.1
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 2.8e-90 336.3 286 59.1
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 3.7e-90 335.9 230 65.7
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 8.2e-90 334.7 281 58.0
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 8.2e-90 334.7 281 58.0
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 2.4e-89 333.2 222 68.5
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 3.1e-89 332.8 223 66.4
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 5.3e-89 332.0 292 55.8
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 7.7e-88 328.2 368 46.7
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 6.5e-87 325.1 276 59.1
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 1.5e-86 323.9 313 53.0
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.5e-86 323.9 246 60.2
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 2.5e-86 323.2 226 62.4
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.6e-85 320.5 267 56.9
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 3.6e-85 319.3 226 61.5
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 4.7e-85 318.9 230 65.7
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 8.0e-85 318.2 262 60.7
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 2.3e-84 316.6 310 49.7
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 5.2e-84 315.5 290 55.2
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 5.7e-83 312.0 231 60.6
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 3.7e-82 309.3 239 62.3
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 9.1e-81 304.7 221 63.8
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 2.2e-79 300.1 199 69.8
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 1.5e-78 297.4 246 58.9
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 1.9e-78 297.0 310 49.7
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 7.2e-78 295.0 299 51.5
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 4.9e-74 282.3 217 58.5
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 1.6e-72 277.3 225 57.3
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 2.3e-71 273.5 230 56.5
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 8.6e-71 271.6 215 54.4
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 3.3e-70 269.6 213 55.9
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 3.6e-69 266.2 197 59.9
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.1e-69 265.4 222 54.5
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.0e-68 264.6 260 50.8
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 1.8e-68 263.8 165 72.1
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.0e-68 262.7 301 44.9
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 2.6e-67 260.0 222 54.1
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 2.2e-66 256.9 211 54.5
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 4.1e-65 252.7 224 52.7
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 5.4e-65 252.3 227 52.0
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 6.6e-63 245.4 151 71.5
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 2.5e-62 243.4 228 54.4
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 7.3e-62 241.9 216 51.9
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.0e-60 238.0 187 59.4
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.2e-59 234.6 217 53.9
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 4.1e-57 226.1 155 69.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 5.0e-55 219.2 182 53.8
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.9e-54 217.2 253 47.4
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 2.0e-51 207.2 204 46.6
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 2.4e-41 173.7 331 34.7
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.9e-38 164.1 160 45.6
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 4.0e-36 156.4 99 72.7
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 3.4e-35 153.3 232 37.5
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.2e-32 144.8 169 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.1e-22 111.7 93 52.7
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 1.1e-22 111.7 102 50.0
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 1.1e-20 105.1 68 72.1
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 3.5e-16 90.1 58 72.4
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 1.9e-09 67.8 53 64.2
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 1.8e-07 61.2 76 43.4
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 1.8e-07 61.2 38 76.3


User provided reference genes

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