Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 0.0e+00 1177.5 605 100.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 8.6e-284 979.9 608 82.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.1e-261 905.6 593 82.0
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 5.6e-243 844.3 612 71.2
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 3.4e-240 835.1 613 71.3
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.3e-236 823.2 625 68.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 8.7e-236 820.5 613 69.5
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 7.4e-235 817.4 615 68.8
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 7.4e-235 817.4 612 68.8
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.6e-234 816.2 612 69.6
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.8e-234 814.7 613 70.1
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 6.2e-234 814.3 610 70.0
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.1e-233 813.5 614 70.8
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 3.1e-233 812.0 607 70.0
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 4.0e-233 811.6 623 69.0
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 4.0e-233 811.6 612 69.6
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 6.9e-233 810.8 612 69.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.6e-232 808.9 615 68.6
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.4e-232 808.5 625 67.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 3.4e-232 808.5 614 68.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.4e-232 808.5 613 69.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.5e-232 808.1 605 68.9
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 5.8e-232 807.7 612 69.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 7.6e-232 807.4 612 69.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-231 805.4 614 68.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 8.4e-231 803.9 611 68.4
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.3e-230 800.4 615 68.3
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.6e-229 799.7 608 67.4
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.1e-229 799.3 614 67.9
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.5e-229 798.5 613 67.4
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 4.6e-229 798.1 618 67.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 4.6e-229 798.1 613 67.4
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 4.6e-229 798.1 613 67.4
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 6.0e-229 797.7 613 67.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.0e-228 797.0 613 68.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.0e-228 795.4 689 63.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.7e-228 794.3 615 67.8
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.5e-227 792.3 613 66.9
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 3.3e-227 792.0 617 67.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 7.4e-227 790.8 616 67.5
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 7.4e-227 790.8 613 66.7
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 9.6e-227 790.4 616 67.4
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.3e-226 790.0 615 68.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.8e-226 788.9 616 66.1
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.8e-225 786.2 617 66.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 5.3e-225 784.6 614 67.8
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 5.9e-224 781.2 617 65.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.0e-223 780.4 615 66.0
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 8.5e-223 777.3 616 64.9
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 8.5e-223 777.3 618 64.6
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.4e-222 776.5 607 65.2
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.2e-222 775.0 603 68.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.2e-221 773.5 611 64.5
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 5.1e-220 768.1 607 67.7
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.1e-220 768.1 615 65.0
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 3.3e-219 765.4 614 64.2
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.8e-218 762.3 614 63.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 3.7e-218 761.9 608 65.3
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 3.1e-217 758.8 608 65.0
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 4.1e-217 758.4 603 66.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 5.3e-217 758.1 614 64.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.0e-216 756.1 614 63.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 7.7e-216 754.2 609 64.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.2e-215 752.7 606 64.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.8e-215 751.9 595 67.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 5.0e-215 751.5 614 64.2
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 5.0e-215 751.5 608 64.3
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 5.0e-215 751.5 609 64.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 8.5e-215 750.7 613 63.1
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 1.1e-214 750.4 606 64.4
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.9e-214 749.6 606 64.2
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.5e-214 749.2 605 65.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 5.5e-214 748.0 606 64.0
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 9.4e-214 747.3 606 63.4
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 9.4e-214 747.3 609 64.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.2e-213 746.9 606 64.0
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 8.8e-212 740.7 572 66.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.8e-210 735.7 612 61.9
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 8.2e-210 734.2 612 61.8
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.4e-208 728.8 607 63.3
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.2e-207 726.1 739 55.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.1e-206 723.8 561 64.5
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.6e-205 719.9 575 66.1
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 7.9e-205 717.6 544 68.2
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.1e-201 707.2 612 60.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 7.7e-200 701.0 547 66.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 9.7e-195 684.1 612 59.3
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.2e-182 642.5 617 55.6
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.0e-180 635.6 616 56.5
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.4e-179 632.1 499 66.1
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 5.9e-176 621.7 605 56.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.0e-172 609.0 678 49.1
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 6.4e-162 575.1 530 58.7
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.6e-159 565.1 683 50.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.5e-152 542.7 492 60.8
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.6e-144 515.8 495 55.6
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 6.9e-140 501.9 352 72.7
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-134 482.6 380 66.1
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-132 478.0 365 67.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 8.2e-117 425.2 362 62.2
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.1e-108 396.4 435 52.0
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 5.5e-105 386.0 256 75.4
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-105 386.0 389 56.3
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.2e-104 384.8 637 38.5
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.9e-103 379.8 322 63.0
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.1e-103 379.4 256 73.0
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 8.7e-103 378.6 360 58.6
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.7e-98 364.4 252 71.8
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.0e-90 338.6 230 74.3
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-89 335.1 243 69.1
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 8.2e-77 292.4 625 34.1
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 2.6e-70 270.8 181 74.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-53 214.5 218 56.4
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-51 208.0 215 56.3
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.7e-51 207.6 159 65.4
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 2.9e-45 187.6 157 58.6
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.7e-42 178.3 111 74.8
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 5.0e-42 176.8 108 79.6
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.6e-42 176.4 110 77.3
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-41 174.9 110 77.3
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-41 174.1 109 78.0
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-39 169.1 110 74.5
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.7e-35 154.5 136 58.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 8.9e-31 139.4 100 69.0
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-30 138.3 134 58.2
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-27 127.9 83 75.9
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-27 127.1 122 57.4
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 4.3e-25 120.6 507 25.8
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.2e-24 119.0 134 50.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.6e-24 118.6 84 69.0
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-23 115.9 80 68.8
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 4.4e-22 110.5 69 76.8
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 7.1e-20 103.2 126 50.0
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.6e-19 102.1 99 51.5
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 1.6e-19 102.1 99 51.5
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-18 98.6 66 74.2
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 2.8e-16 91.3 85 51.8
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-15 87.4 53 71.7
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 6.4e-13 80.1 144 42.4
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-11 74.7 57 70.2
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.7e-10 70.1 51 64.7
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-10 70.1 41 75.6
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-09 67.4 39 76.9
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 7.4e-09 66.6 178 24.7
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 2.8e-08 64.7 38 68.4
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.1e-07 62.8 40 72.5
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.5e-06 58.9 43 65.1
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 7.6e-06 56.6 57 49.1


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