Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 5.0e-213 744.2 382 100.0
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 2.4e-159 565.8 364 83.5
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 6.2e-147 524.6 313 86.6
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 6.2e-139 498.0 313 81.5
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.0e-133 480.7 326 75.2
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 3.3e-132 475.7 299 81.3
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 4.3e-132 475.3 299 81.3
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.3e-131 473.8 301 78.7
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 3.7e-131 472.2 301 80.7
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 3.7e-131 472.2 301 79.1
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 6.3e-131 471.5 301 79.7
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 6.3e-131 471.5 301 79.7
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 8.2e-131 471.1 302 78.5
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 1.4e-130 470.3 302 80.1
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.4e-130 470.3 301 79.4
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.8e-130 469.9 301 79.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 3.1e-130 469.2 301 79.1
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 9.0e-130 467.6 301 79.1
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.2e-129 467.2 313 76.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.5e-129 466.8 301 78.4
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 2.6e-129 466.1 303 77.6
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 2.6e-129 466.1 316 76.6
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 5.9e-129 464.9 301 77.7
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 5.9e-129 464.9 304 77.6
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.7e-128 463.4 312 76.3
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.7e-128 463.4 303 78.9
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.2e-128 463.0 311 77.2
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 3.8e-128 462.2 315 76.2
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 3.8e-128 462.2 314 75.5
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 6.5e-128 461.5 301 77.4
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 8.5e-128 461.1 301 76.4
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.1e-127 460.7 301 76.4
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 4.2e-127 458.8 303 77.6
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.6e-126 456.8 312 74.4
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 3.6e-126 455.7 313 75.7
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.6e-126 455.3 323 73.4
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 7.9e-126 454.5 310 76.8
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.0e-125 454.1 306 76.8
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.8e-125 453.4 302 76.8
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.8e-125 453.4 306 76.8
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 5.1e-125 451.8 301 77.1
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 6.7e-125 451.4 346 70.2
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.5e-124 450.3 302 76.5
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 2.0e-124 449.9 314 74.5
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 2.5e-124 449.5 328 72.3
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.3e-124 449.1 317 73.5
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 3.3e-124 449.1 298 76.5
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 4.3e-124 448.7 301 74.8
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 5.7e-124 448.4 303 75.2
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 5.7e-124 448.4 301 75.4
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 5.7e-124 448.4 314 73.2
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 3.7e-123 445.7 340 70.3
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 8.2e-123 444.5 320 73.1
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.4e-122 443.7 304 75.7
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.4e-122 443.0 302 74.8
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 6.9e-122 441.4 304 75.3
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 9.1e-122 441.0 310 74.2
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.5e-121 440.3 310 72.9
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.5e-121 440.3 305 74.4
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.5e-121 440.3 305 74.4
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.0e-121 439.9 296 77.4
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.9e-121 438.3 338 68.6
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 5.9e-121 438.3 314 70.7
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 5.9e-121 438.3 314 72.6
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 2.9e-120 436.0 316 72.5
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 2.9e-120 436.0 316 72.5
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 2.9e-120 436.0 316 72.5
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 6.5e-120 434.9 302 73.2
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 6.5e-120 434.9 310 71.6
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.1e-119 434.1 300 72.0
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.4e-119 433.7 302 73.5
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-119 433.7 302 73.5
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.4e-119 433.7 302 73.5
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.4e-119 433.7 302 73.5
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.4e-119 433.7 302 73.5
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 3.2e-119 432.6 311 73.0
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 3.2e-119 432.6 310 72.6
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 4.2e-119 432.2 299 73.2
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.6e-118 430.3 310 72.3
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 2.1e-118 429.9 304 73.4
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.8e-117 426.8 301 73.1
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 5.1e-117 425.2 319 69.9
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 5.7e-116 421.8 303 71.3
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 7.4e-116 421.4 295 72.5
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.3e-115 420.6 301 71.8
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.7e-115 420.2 302 70.9
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 4.8e-115 418.7 312 70.8
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-114 417.5 326 67.8
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 2.4e-114 416.4 312 70.5
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 4.1e-114 415.6 306 70.6
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 4.1e-114 415.6 302 70.5
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 7.0e-114 414.8 299 71.2
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 9.1e-114 414.5 295 71.2
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.5e-113 413.7 312 69.9
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.0e-113 413.3 307 68.7
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.0e-113 413.3 312 69.6
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 2.6e-113 412.9 306 70.3
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.6e-113 412.9 307 68.7
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.9e-113 411.8 299 72.2
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 5.9e-113 411.8 309 67.6
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.0e-112 408.7 312 67.6
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.9e-111 406.8 294 70.4
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 7.2e-111 404.8 312 67.0
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 6.1e-110 401.7 312 66.7
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.4e-109 400.6 270 77.4
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.8e-107 392.9 305 65.9
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.4e-106 389.8 250 77.2
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 4.7e-102 375.6 312 65.1
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 4.4e-100 369.0 279 68.1
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.2e-99 366.7 296 66.2
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 2.9e-96 356.3 231 77.9
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 6.5e-96 355.1 292 61.6
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 8.5e-96 354.8 231 79.2
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 2.1e-94 350.1 323 56.3
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 3.0e-93 346.3 298 60.4
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 8.3e-91 338.2 242 72.3
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.2e-89 334.3 274 59.5
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.3e-87 326.2 286 63.6
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.1e-86 323.6 275 67.3
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.4e-85 320.9 317 52.4
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 8.9e-85 318.2 299 53.2
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 4.4e-84 315.8 219 71.7
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.3e-83 314.3 211 76.8
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 5.4e-74 282.3 243 59.7
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 4.0e-69 266.2 242 61.6
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 6.4e-67 258.8 300 45.3
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.3e-63 246.1 157 78.3
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 2.1e-62 243.8 275 47.3
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 9.9e-60 235.0 149 78.5
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 3.1e-53 213.4 304 45.4
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.7e-48 197.6 156 64.7
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 5.8e-44 182.6 112 78.6
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.0e-40 171.8 225 40.9
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 4.5e-36 156.4 277 35.0
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-35 153.3 94 78.7
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.8e-35 153.3 187 49.7
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.1e-34 151.8 94 77.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-34 151.8 94 77.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 8.7e-32 142.1 114 69.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 2.5e-31 140.6 95 77.9
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 3.1e-29 133.7 388 29.6
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 1.2e-28 131.7 102 66.7
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.0e-19 99.8 196 39.3
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.3e-18 95.5 53 86.8
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.7e-17 94.0 95 57.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.7e-17 94.0 72 66.7
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.6e-14 84.7 99 51.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.0e-11 75.5 58 67.2
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.9e-11 73.9 46 78.3
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.9e-11 73.9 46 78.3
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 5.5e-10 69.7 44 72.7
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.7e-07 58.9 107 41.1
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.2e-06 55.8 30 83.3
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.2e-06 55.8 30 83.3
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.2e-06 55.8 30 83.3
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.2e-06 55.8 30 83.3
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.2e-06 55.8 30 83.3


User provided reference genes

Program Settings