Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1881.7 949 100.0
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1503.0 946 80.1
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 0.0e+00 1472.2 949 78.1
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1276.9 939 68.4
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1271.9 957 67.2
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1270.4 957 67.1
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1266.5 939 68.1
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1248.0 949 65.9
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1214.5 969 63.7
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1187.2 954 62.9
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1177.2 944 63.5
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1171.4 945 63.0
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1169.1 947 61.7
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1165.2 947 61.8
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1162.9 937 62.5
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1162.5 944 62.1
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1148.7 940 62.2
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1148.7 954 61.4
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 939 61.9
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1147.9 945 61.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1146.3 937 62.2
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1142.1 949 61.3
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1141.3 946 60.7
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1129.0 953 60.3
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1118.6 956 59.6
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1116.3 944 60.1
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1115.1 944 60.0
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1113.6 946 60.4
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1113.2 943 59.9
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1110.1 957 60.1
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1105.5 954 59.9
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1100.5 945 59.6
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1095.1 958 59.1
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1094.0 958 59.3
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1092.4 948 58.4
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1090.9 956 59.2
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1088.6 962 58.2
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1086.6 954 59.1
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 0.0e+00 1084.7 948 58.3
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1080.5 950 57.8
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1078.2 944 57.8
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1077.8 968 57.9
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1076.6 951 59.0
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1076.2 944 58.3
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1075.1 954 56.9
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 6.5e-312 1073.9 956 58.4
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 2.6e-311 1072.0 947 58.6
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 1.9e-309 1065.8 947 57.8
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 3.5e-308 1061.6 945 57.9
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 4.6e-308 1061.2 954 57.3
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 8.7e-307 1057.0 997 56.7
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 9.6e-306 1053.5 954 56.2
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 1.4e-304 1049.7 932 58.4
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 1.8e-304 1049.3 972 54.8
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 4.0e-304 1048.1 952 56.3
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 1.2e-303 1046.6 945 56.9
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 2.0e-303 1045.8 951 56.0
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 7.6e-303 1043.9 953 56.5
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 4.9e-302 1041.2 951 56.4
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 2.4e-301 1038.9 950 57.5
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 3.2e-301 1038.5 957 55.9
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.7e-300 1035.4 948 57.2
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 6.0e-300 1034.2 948 54.9
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 6.0e-300 1034.2 948 54.9
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 8.7e-299 1030.4 954 55.1
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 1.1e-298 1030.0 847 62.5
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 1.5e-298 1029.6 948 55.1
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 4.8e-297 1024.6 942 55.6
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 8.1e-297 1023.8 924 55.4
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 2.4e-293 1012.3 966 54.6
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 1.3e-291 1006.5 925 54.8
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 3.3e-290 1001.9 916 57.8
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 3.3e-290 1001.9 1006 54.1
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 9.6e-290 1000.3 949 53.8
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 2.1e-289 999.2 953 55.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 2.8e-289 998.8 945 54.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 2.0e-287 992.6 941 57.5
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 4.5e-287 991.5 948 55.4
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.3e-286 989.9 834 60.4
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 3.2e-285 985.3 948 55.1
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 7.6e-279 964.1 955 52.9
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.4e-277 959.9 773 62.4
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.7e-276 955.7 951 52.7
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.7e-273 945.3 952 52.9
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 1.1e-264 917.1 803 57.5
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.7e-262 909.8 698 65.8
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.6e-258 896.0 687 65.1
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 6.7e-251 871.3 737 60.4
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 8.5e-246 854.4 866 50.5
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 9.1e-240 834.3 832 51.1
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 1.7e-238 830.1 943 48.8
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 2.8e-220 769.6 954 45.3
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 4.4e-210 735.7 653 58.0
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.1e-187 661.4 986 40.6
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 1.9e-184 650.6 873 41.9
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 3.0e-182 643.3 947 40.2
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 2.8e-164 583.6 499 57.9
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 1.1e-147 528.5 735 41.6
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 5.9e-146 522.7 883 35.8
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 7.4e-141 505.8 935 34.1
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 1.1e-136 491.9 908 34.6
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.5e-133 479.2 420 57.9
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-130 471.5 406 60.8
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 1.6e-127 461.5 434 53.5
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 3.7e-124 450.3 464 55.0
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 5.6e-112 409.8 452 52.4
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-104 385.6 424 51.7
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 6.4e-92 343.2 256 67.2
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.1e-58 231.9 200 58.0
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 2.2e-39 168.7 328 36.9
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.9e-38 163.7 331 35.6
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-37 162.9 139 59.0
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.2e-37 162.9 471 30.8
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.4e-35 156.0 344 32.6
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 4.1e-30 137.9 115 61.7
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 2.2e-28 132.1 131 56.5
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.6e-26 124.8 237 38.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.9e-21 107.5 131 50.4
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.0e-20 106.7 135 44.4
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 7.2e-19 100.5 116 46.6
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 1.6e-18 99.4 72 65.3
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-18 99.4 72 65.3
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 3.6e-18 98.2 72 66.7
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 2.3e-17 95.5 72 62.5
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 4.0e-17 94.7 72 62.5
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 6.8e-17 94.0 68 67.6
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.5e-16 92.8 145 40.7
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.8e-14 85.9 61 75.4
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.1e-14 85.1 61 77.0
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.0e-12 80.1 61 63.9
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.8e-12 78.2 61 63.9
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 3.6e-10 71.6 49 67.3
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 3.6e-10 71.6 55 60.0
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.2e-09 67.8 55 58.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.8e-09 67.4 80 42.5
Pp3c19_1150 Physcomitrium patens HOM05D004953 ORTHO05D006193 8.8e-09 67.0 84 39.3
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 8.8e-09 67.0 69 46.4
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.5e-08 66.2 55 56.4
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 2.6e-08 65.5 38 76.3
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 7.5e-08 63.9 173 28.9
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.2e-07 62.4 38 73.7
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-06 60.1 60 56.7


User provided reference genes

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