Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 7.6e-80 300.4 152 100.0
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 1.9e-54 216.1 150 74.0
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 1.1e-49 200.3 149 71.8
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 2.9e-47 192.2 147 67.3
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 5.0e-47 191.4 147 68.0
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 1.1e-46 190.3 151 68.2
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 1.1e-43 180.3 160 60.0
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 4.4e-43 178.3 166 61.4
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 4.1e-41 171.8 167 59.3
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 1.2e-40 170.2 167 58.7
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 2.6e-40 169.1 159 56.0
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 3.5e-40 168.7 162 58.6
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 3.5e-40 168.7 162 59.9
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 1.7e-39 166.4 160 56.2
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 2.9e-39 165.6 152 60.5
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 3.8e-39 165.2 162 54.3
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 1.5e-38 163.3 160 58.1
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 1.9e-38 162.9 162 54.3
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.5e-38 162.5 165 55.8
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 2.5e-38 162.5 158 54.4
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 5.5e-38 161.4 179 50.8
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 7.2e-38 161.0 160 56.9
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 7.2e-38 161.0 165 55.8
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 7.2e-38 161.0 149 53.0
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 7.2e-38 161.0 158 53.2
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 1.6e-37 159.8 154 54.5
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 2.7e-37 159.1 154 59.1
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 3.6e-37 158.7 156 53.2
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 4.7e-37 158.3 163 52.8
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 4.7e-37 158.3 159 53.5
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 4.7e-37 158.3 157 55.4
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 6.1e-37 157.9 163 49.1
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 6.1e-37 157.9 156 53.2
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 8.0e-37 157.5 162 52.5
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 1.0e-36 157.1 163 51.5
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 1.0e-36 157.1 159 52.2
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 1.0e-36 157.1 157 53.5
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 1.4e-36 156.8 167 52.1
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 2.3e-36 156.0 158 53.2
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 3.0e-36 155.6 167 52.1
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 3.0e-36 155.6 165 51.5
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 4.0e-36 155.2 159 50.9
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 4.0e-36 155.2 153 54.2
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 4.0e-36 155.2 163 53.4
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 5.2e-36 154.8 154 52.6
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 5.2e-36 154.8 167 50.3
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 6.7e-36 154.5 132 65.2
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 8.8e-36 154.1 161 52.2
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 8.8e-36 154.1 163 50.9
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 1.2e-35 153.7 153 53.6
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 1.2e-35 153.7 163 53.4
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 1.5e-35 153.3 159 54.1
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 2.0e-35 152.9 151 51.0
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 2.6e-35 152.5 175 48.0
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 2.6e-35 152.5 153 50.3
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 2.6e-35 152.5 152 50.7
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 3.3e-35 152.1 163 52.8
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 3.3e-35 152.1 158 51.9
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 4.4e-35 151.8 162 48.8
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 5.7e-35 151.4 151 53.0
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 5.7e-35 151.4 163 52.8
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 7.5e-35 151.0 161 53.4
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 9.7e-35 150.6 161 52.8
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 9.7e-35 150.6 157 52.2
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 9.7e-35 150.6 168 48.2
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 9.7e-35 150.6 167 49.1
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 9.7e-35 150.6 143 60.1
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 1.3e-34 150.2 162 50.6
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 1.3e-34 150.2 160 50.6
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 1.3e-34 150.2 162 50.0
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 2.2e-34 149.4 161 49.1
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 2.2e-34 149.4 152 52.6
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 8.2e-34 147.5 160 48.8
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 8.2e-34 147.5 157 50.3
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 1.4e-33 146.7 161 49.1
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 1.4e-33 146.7 158 50.0
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 1.8e-33 146.4 160 50.6
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 2.4e-33 146.0 150 51.3
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 4.1e-33 145.2 163 48.5
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 5.3e-33 144.8 162 51.2
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 5.3e-33 144.8 162 51.2
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 7.0e-33 144.4 161 49.7
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 1.2e-32 143.7 160 50.6
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 1.2e-32 143.7 160 50.0
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 1.2e-32 143.7 160 50.0
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 1.2e-32 143.7 161 49.1
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 1.6e-32 143.3 160 50.0
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 1.6e-32 143.3 160 50.0
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 1.6e-32 143.3 163 50.3
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 2.7e-32 142.5 163 50.3
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 3.5e-32 142.1 163 48.5
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 3.5e-32 142.1 164 50.0
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 3.5e-32 142.1 164 50.0
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 4.5e-32 141.7 160 47.5
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 7.7e-32 141.0 161 46.6
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 1.0e-31 140.6 156 49.4
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 2.5e-30 136.0 161 47.2
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 4.2e-30 135.2 160 50.0
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 4.7e-29 131.7 149 49.0
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 8.0e-29 131.0 158 47.5
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 8.0e-29 131.0 161 42.9
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 4.4e-27 125.2 192 39.1
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 5.7e-27 124.8 163 43.6
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 7.5e-27 124.4 160 45.0
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 9.8e-27 124.0 153 47.7
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 4.8e-26 121.7 153 43.8
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 3.1e-25 119.0 95 64.2
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 5.4e-25 118.2 154 42.9
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 2.2e-23 112.8 162 43.8
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 8.5e-23 110.9 120 49.2
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 2.1e-21 106.3 102 52.0
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 7.0e-17 91.3 188 33.0
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.2e-16 90.5 143 35.7
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 1.7e-15 86.7 133 38.3
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 3.8e-15 85.5 161 38.5
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 5.0e-15 85.1 164 32.9
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 9.5e-14 80.9 159 36.5
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 2.1e-13 79.7 156 32.1
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 1.0e-12 77.4 66 57.6
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 4.0e-12 75.5 148 34.5
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.0e-11 73.2 65 53.8
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 2.6e-11 72.8 157 33.8
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 5.7e-11 71.6 130 34.6
Pp3c16_2040 Physcomitrium patens HOM05D006035 ORTHO05D007155 1.4e-09 67.0 156 30.8
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 2.4e-09 66.2 104 38.5
CBR_g28477 Chara braunii HOM05D000227 ORTHO05D000451 4.1e-09 65.5 139 29.5
Medtr7g115040 Medicago truncatula HOM05D000227 ORTHO05D000451 7.0e-09 64.7 135 31.1
Aa31LG6G13960 Aethionema arabicum HOM05D000227 ORTHO05D004725 9.2e-09 64.3 141 25.5
CBR_g28479 Chara braunii HOM05D000227 ORTHO05D007155 1.2e-08 63.9 139 28.8
MBI19_g26577_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 1.6e-08 63.5 142 31.0
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 1.3e-07 60.5 123 29.3
Carub.0008s0934 Capsella rubella HOM05D006035 ORTHO05D007155 1.7e-07 60.1 166 31.3
AUR62019110 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.7e-07 60.1 140 29.3
Ciclev10002774m.g Citrus clementina HOM05D000227 ORTHO05D000451 1.7e-07 60.1 147 27.9
MELO3C004375.2 Cucumis melo HOM05D000227 ORTHO05D000451 1.7e-07 60.1 142 31.0
FAN10G0417 Fragaria x ananassa HOM05D000227 ORTHO05D000139 1.7e-07 60.1 120 28.3
MCO09G601 Micromonas commoda HOM05D000227 ORTHO05D000451 2.3e-07 59.7 139 28.1
GSVIVG01021797001 Vitis vinifera HOM05D000227 ORTHO05D000451 2.3e-07 59.7 154 26.6
CsaV3_2G004190 Cucumis sativus L. HOM05D000227 ORTHO05D000451 3.0e-07 59.3 142 30.3
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 3.9e-07 58.9 145 29.0
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 3.9e-07 58.9 145 29.0
Gohir.D07G202500 Gossypium hirsutum HOM05D000135 ORTHO05D000203 5.0e-07 58.5 141 33.3
Gorai.001G227900 Gossypium raimondii HOM05D000135 ORTHO05D000203 5.0e-07 58.5 141 33.3
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 8.6e-07 57.8 141 27.7
Pp3c25_1480 Physcomitrium patens HOM05D000227 ORTHO05D007155 8.6e-07 57.8 146 28.1
CSS0037530 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 1.1e-06 57.4 142 27.5
HPP92_020345 Vanilla planifolia HOM05D000227 ORTHO05D000451 1.1e-06 57.4 140 26.4
Lj1g0018674 Lotus japonicus HOM05D000227 ORTHO05D000451 1.5e-06 57.0 136 30.9
MELO3C017756.2 Cucumis melo HOM05D000059 ORTHO05D000528 1.9e-06 56.6 98 27.6
Gohir.A07G196100 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.9e-06 56.6 118 35.6
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 2.5e-06 56.2 145 28.3
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 2.5e-06 56.2 117 30.8
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 2.5e-06 56.2 150 31.3
VMungo0540G0537 Vigna mungo HOM05D000227 ORTHO05D000451 2.5e-06 56.2 137 29.9
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 3.3e-06 55.8 148 27.0
PGR083G1403 Punica granatum HOM05D000135 ORTHO05D000203 3.3e-06 55.8 141 29.8
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 4.3e-06 55.5 145 28.3
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 4.3e-06 55.5 145 28.3
Lj9P420T29 Lonicera japonica HOM05D000135 ORTHO05D000203 4.3e-06 55.5 138 29.7
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 5.6e-06 55.1 145 27.6
Lj2g0017494 Lotus japonicus HOM05D000135 ORTHO05D000203 5.6e-06 55.1 139 27.3
TAR369G0257 Trochodendron aralioides HOM05D000135 ORTHO05D004276 5.6e-06 55.1 153 31.4
Aqoxy2G03480 Aquilegia oxysepala HOM05D000227 ORTHO05D000451 7.3e-06 54.7 140 26.4
Glyma.03G246800 Glycine max HOM05D000227 ORTHO05D000451 7.3e-06 54.7 135 29.6
QL06p006093 Quercus lobata HOM05D001729 ORTHO05D001155 7.3e-06 54.7 47 55.3
SEGI_22464 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 7.3e-06 54.7 121 33.9
TAR636G0693 Trochodendron aralioides HOM05D000135 ORTHO05D000203 7.3e-06 54.7 142 30.3
CSS0036108 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 9.5e-06 54.3 144 29.9
CBR_g45618 Chara braunii HOM05D000227 ORTHO05D000451 9.5e-06 54.3 139 26.6
FvH4_7g20701 Fragaria vesca HOM05D000227 ORTHO05D000451 9.5e-06 54.3 146 24.7
FAN12G1754 Fragaria x ananassa HOM05D000135 ORTHO05D000203 9.5e-06 54.3 151 25.2
Glyma.19G244300 Glycine max HOM05D000227 ORTHO05D000451 9.5e-06 54.3 135 28.9
Sopen11g020440 Solanum pennellii HOM05D000135 ORTHO05D000203 9.5e-06 54.3 143 29.4
SGA_v2.0_scaffold12G06164 Striga asiatica HOM05D000135 ORTHO05D000203 9.5e-06 54.3 128 29.7
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 9.5e-06 54.3 137 30.7
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 9.5e-06 54.3 137 30.7


User provided reference genes

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