Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 3456.4 1777 100.0
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 3456.4 1777 100.0
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 2397.9 1869 70.8
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 2343.9 1885 68.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1857.4 1927 55.8
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1844.7 1891 55.7
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1838.5 1847 56.5
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1800.0 1589 61.0
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1798.1 1579 60.9
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1796.6 1977 53.7
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1793.9 1942 53.7
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1790.0 1908 54.5
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1787.7 1880 54.9
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1777.7 1859 55.0
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1769.6 1850 55.4
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1768.8 1548 61.6
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1767.7 1854 55.3
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1765.0 1850 55.1
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1764.6 1960 52.8
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1760.3 1828 55.4
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1758.0 1830 55.0
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1755.7 1544 61.3
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1754.2 1867 54.2
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1753.0 1811 54.8
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1750.3 1668 57.7
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1746.1 1936 52.7
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1733.8 1819 54.2
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1731.8 1814 54.5
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1730.3 1834 53.9
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1729.5 2011 51.0
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1725.7 1807 54.0
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1706.8 1884 52.3
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1706.8 1895 52.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1705.6 1787 54.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1702.2 1841 53.4
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1699.5 1875 52.6
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1694.9 1813 53.2
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1690.6 1857 52.8
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1690.2 1816 53.2
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1688.7 1867 52.5
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1688.3 1816 53.5
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1687.2 1840 52.3
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1684.8 1895 53.6
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1684.1 1873 52.3
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1681.0 1820 53.2
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1679.5 1805 54.3
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1676.4 1852 52.6
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1669.8 1855 52.7
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1667.1 1843 52.3
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1661.4 1893 50.7
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1657.5 1809 51.9
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1654.4 1794 52.3
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1645.2 1855 51.6
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1643.6 1947 50.0
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1640.9 1875 51.7
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1640.9 1871 51.3
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1639.8 1841 50.8
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1637.9 1859 51.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1636.3 1949 49.9
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1636.3 1804 51.3
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1630.5 1949 50.5
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1630.2 1857 51.4
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1622.8 1851 51.5
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1622.8 1917 50.1
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1619.4 1844 50.5
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1617.8 1845 51.5
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1617.8 1877 51.4
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1610.9 1870 51.3
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1602.4 1866 49.6
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1602.0 1878 49.8
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1600.9 1875 50.0
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1592.4 1866 49.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1592.0 1717 52.9
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1582.8 1884 49.5
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1578.5 1868 48.9
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1569.7 1591 55.0
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1568.1 1858 49.9
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1568.1 1863 49.5
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1566.2 1894 49.2
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1565.8 1842 49.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1564.7 1840 48.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1562.0 1824 49.2
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1558.9 1804 49.3
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1556.2 1806 50.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1555.8 1906 48.2
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1552.7 1917 49.3
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1550.8 1849 50.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1543.1 1542 56.9
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1542.3 1911 49.4
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1527.7 1854 48.2
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1527.3 1479 56.7
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1519.2 1327 61.6
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1518.1 1846 48.4
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1509.2 1960 47.9
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1505.0 1856 48.9
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1488.4 1993 47.1
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1397.9 1236 60.3
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1325.1 1841 44.1
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1317.4 1484 50.7
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1203.3 1198 56.6
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 5.2e-289 998.8 1807 38.1
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.9e-283 980.3 1802 37.0
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 2.1e-282 976.9 1541 38.5
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 1.4e-281 974.2 1787 38.8
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 6.0e-269 932.2 1646 36.6
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 6.0e-269 932.2 1009 54.9
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.9e-267 927.2 966 52.1
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 3.7e-266 922.9 1853 34.6
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.0e-244 850.1 881 53.9
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.7e-223 781.2 1049 45.1
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 1.1e-217 761.9 939 49.6
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.5e-206 724.2 857 51.9
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 3.2e-201 707.2 1431 34.5
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.9e-194 683.3 735 51.3
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.9e-190 671.4 981 43.5
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 7.3e-182 642.9 1775 28.6
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 1.3e-178 632.1 580 57.2
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 6.7e-159 566.6 1160 35.3
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 6.7e-151 540.0 792 43.7
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 4.9e-146 523.9 535 53.5
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 3.2e-137 494.6 277 90.3
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 2.0e-131 475.3 470 55.7
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.9e-130 471.5 657 43.8
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.4e-116 425.2 535 45.2
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 2.5e-113 415.2 563 43.3
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.7e-106 392.5 579 41.6
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 9.2e-84 317.0 585 40.5
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 8.1e-72 277.3 421 42.5
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 3.9e-58 231.9 378 40.5
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 7.3e-57 227.6 358 39.9
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 5.8e-54 218.0 229 52.4
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 6.9e-47 194.5 120 80.0
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.4e-46 192.2 337 39.5
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.5e-41 176.8 494 31.4
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 5.6e-41 174.9 195 53.8
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.8e-40 172.6 608 30.4
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 8.1e-40 171.0 466 32.2
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.7e-37 163.3 169 49.1
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.9e-36 159.8 1106 21.5
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 4.8e-32 145.2 158 47.5
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.5e-30 140.2 159 49.1
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 1.6e-27 130.2 158 48.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.1e-27 129.8 111 58.6
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.9e-26 125.6 230 33.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 6.7e-26 124.8 159 45.3
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 5.3e-23 115.2 120 54.2
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 9.0e-23 114.4 94 60.6
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 1.5e-22 113.6 325 28.9
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 6.5e-21 108.2 80 65.0
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 2.0e-17 96.7 151 45.7
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.4e-15 90.5 55 74.5
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 4.5e-14 85.5 85 57.6
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 3.9e-10 72.4 51 68.6
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.3e-09 69.3 59 61.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 4.8e-08 65.5 133 33.1
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.8e-07 63.5 149 33.6
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 7.7e-06 58.2 60 48.3


User provided reference genes

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