Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0351181 Helianthus annuus HOM05D003236 ORTHO05D003620 5.0e-52 207.6 113 100.0
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 2.0e-29 132.5 125 65.6
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 5.9e-29 131.0 125 64.8
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 5.6e-27 124.4 125 61.6
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 4.0e-25 118.2 106 67.9
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 6.4e-23 110.9 106 64.2
Hma1.2p1_0995F.1_g245780 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 2.4e-22 109.0 124 56.5
CSS0018012 Camellia sinensis var. sinensis HOM05D003236 ORTHO05D003620 5.4e-22 107.8 124 56.5
PGSC0003DMG402004220 Solanum tuberosum HOM05D003236 ORTHO05D003620 2.0e-21 105.9 126 54.8
Prupe.6G171900 Prunus persica HOM05D003236 ORTHO05D003620 2.7e-21 105.5 126 55.6
Prupe.6G197600 Prunus persica HOM05D003236 ORTHO05D003620 5.9e-21 104.4 126 56.3
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 1.0e-20 103.6 125 53.6
CsaV3_3G013580 Cucumis sativus L. HOM05D003236 ORTHO05D003620 1.0e-20 103.6 124 53.2
ClCG05G011190 Citrullus lanatus HOM05D003236 ORTHO05D003620 1.7e-20 102.8 124 52.4
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 1.7e-20 102.8 124 52.4
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 1.7e-20 102.8 106 57.5
Sabra10G0147500 Salix brachista HOM05D003236 ORTHO05D003620 2.3e-20 102.4 125 54.4
Sabra16G0185700 Salix brachista HOM05D003236 ORTHO05D003620 2.3e-20 102.4 125 53.6
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 3.0e-20 102.1 120 55.0
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.9e-20 101.7 124 51.6
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.9e-20 101.7 124 52.4
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 5.0e-20 101.3 118 55.1
CiPaw.02G093600 Carya illinoinensis HOM05D003236 ORTHO05D003620 6.6e-20 100.9 124 51.6
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 6.6e-20 100.9 124 51.6
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 6.6e-20 100.9 107 57.0
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 6.6e-20 100.9 106 57.5
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 6.6e-20 100.9 103 58.3
PGSC0003DMG401011813 Solanum tuberosum HOM05D003236 ORTHO05D003620 8.6e-20 100.5 125 52.0
Actinidia23501 Actinidia chinensis HOM05D003236 ORTHO05D003620 1.1e-19 100.1 124 53.2
Eucgr.B01114 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.1e-19 100.1 123 53.7
arahy.Tifrunner.gnm1.ann1.4929ND Arachis hypogaea HOM05D003236 ORTHO05D003620 1.5e-19 99.8 125 52.0
arahy.Tifrunner.gnm1.ann1.IC6NPA Arachis hypogaea HOM05D000043 ORTHO05D001371 1.5e-19 99.8 125 52.0
Eucgr.B01115 Eucalyptus grandis HOM05D003236 ORTHO05D003620 1.9e-19 99.4 124 50.8
Potri.010G191800 Populus trichocarpa HOM05D003236 ORTHO05D003620 2.5e-19 99.0 125 52.8
Cpa.g.sc125.28 Carica papaya HOM05D003236 ORTHO05D003620 5.6e-19 97.8 124 53.2
Glyma.13G207200 Glycine max HOM05D003236 ORTHO05D003620 5.6e-19 97.8 125 51.2
Lalb_Chr18g0056161 Lupinus albus HOM05D003236 ORTHO05D003620 5.6e-19 97.8 106 54.7
BolC5t34779H Brassica oleracea HOM05D003236 ORTHO05D003620 7.3e-19 97.4 118 54.2
Glyma.15G105400 Glycine max HOM05D003236 ORTHO05D003620 7.3e-19 97.4 125 51.2
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 7.3e-19 97.4 103 55.3
BraA05t22916Z Brassica rapa HOM05D003236 ORTHO05D003620 9.5e-19 97.1 125 52.8
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 9.5e-19 97.1 124 50.8
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 9.5e-19 97.1 126 53.2
Lj6g0023183 Lotus japonicus HOM05D003236 ORTHO05D003620 1.2e-18 96.7 94 58.5
MD13G1185700 Malus domestica HOM05D003236 ORTHO05D003620 1.2e-18 96.7 122 54.1
Nn4g26225 Nelumbo nucifera HOM05D003236 ORTHO05D003620 1.2e-18 96.7 124 51.6
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 1.6e-18 96.3 124 51.6
A05p41940 Brassica napus HOM05D003236 ORTHO05D003620 2.1e-18 95.9 118 54.2
Ciclev10005413m.g Citrus clementina HOM05D003236 ORTHO05D003620 2.1e-18 95.9 114 55.3
MBI19_g44204_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 2.1e-18 95.9 100 58.0
Thhalv10021124m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 2.8e-18 95.5 101 57.4
Gorai.012G088500 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.8e-18 95.5 117 53.0
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 2.8e-18 95.5 100 57.0
CARHR080570 Cardamine hirsuta HOM05D003236 ORTHO05D003620 3.6e-18 95.1 101 57.4
DCAR_027180 Daucus carota HOM05D003236 ORTHO05D003620 3.6e-18 95.1 124 53.2
C05p61190 Brassica napus HOM05D003236 ORTHO05D003620 4.7e-18 94.7 125 52.8
Lj3P750T44 Lonicera japonica HOM05D003236 ORTHO05D003620 4.7e-18 94.7 124 50.0
PSO210G7458 Papaver somniferum HOM05D003236 ORTHO05D003620 4.7e-18 94.7 94 58.5
PGR142G1056 Punica granatum HOM05D003236 ORTHO05D003620 4.7e-18 94.7 124 51.6
Sp3g05010 Schrenkiella parvula HOM05D003236 ORTHO05D003620 4.7e-18 94.7 101 57.4
Sc13g0004130 Simmondsia chinensis HOM05D003236 ORTHO05D003620 4.7e-18 94.7 124 49.2
BcaC05g30061 Brassica carinata HOM05D003236 ORTHO05D003620 6.2e-18 94.4 118 53.4
Haze_00533 Corylus avellana HOM05D003236 ORTHO05D003620 6.2e-18 94.4 121 52.1
RcHm_v2.0_Chr6g0272881 Rosa chinensis HOM05D003236 ORTHO05D003620 6.2e-18 94.4 118 50.8
Aa31LG5G16550 Aethionema arabicum HOM05D003236 ORTHO05D003620 8.0e-18 94.0 100 56.0
Carub.0003s0550 Capsella rubella HOM05D003236 ORTHO05D003620 8.0e-18 94.0 101 56.4
VMungo0540G1138 Vigna mungo HOM05D003236 ORTHO05D003620 1.1e-17 93.6 115 51.3
AT3G06060 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 1.4e-17 93.2 101 56.4
Duzib187G1207 Durio zibethinus HOM05D003236 ORTHO05D003620 1.4e-17 93.2 117 51.3
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 1.8e-17 92.8 106 51.9
PSO832G4100 Papaver somniferum HOM05D003236 ORTHO05D003620 1.8e-17 92.8 114 52.6
Lalb_Chr15g0087401 Lupinus albus HOM05D003236 ORTHO05D003620 2.3e-17 92.4 106 53.8
Lalb_Chr20g0118481 Lupinus albus HOM05D003236 ORTHO05D003620 2.3e-17 92.4 106 52.8
PSO017G3704 Papaver somniferum HOM05D003236 ORTHO05D003620 2.3e-17 92.4 100 54.0
PSO478G0559 Papaver somniferum HOM05D003236 ORTHO05D003620 2.3e-17 92.4 100 54.0
MSTRG.10005 Avicennia marina HOM05D003236 ORTHO05D003620 3.1e-17 92.0 124 47.6
BcaB08g36592 Brassica carinata HOM05D003236 ORTHO05D003620 3.1e-17 92.0 121 52.9
Gohir.A05G340100 Gossypium hirsutum HOM05D003236 ORTHO05D003620 3.1e-17 92.0 117 52.1
Phvul.006G152000 Phaseolus vulgaris HOM05D003236 ORTHO05D003620 3.1e-17 92.0 115 51.3
Thecc.04G030700 Theobroma cacao HOM05D003236 ORTHO05D003620 3.1e-17 92.0 117 50.4
COL.COLO4_08743 Corchorus olitorius HOM05D003236 ORTHO05D003620 4.0e-17 91.7 119 50.4
Migut.G00306 Erythranthe guttata HOM05D003236 ORTHO05D003620 4.0e-17 91.7 100 54.0
Peaxi162Scf00069g01432 Petunia axillaris HOM05D003236 ORTHO05D003620 4.0e-17 91.7 119 52.9
Gohir.D04G078600 Gossypium hirsutum HOM05D003236 ORTHO05D003620 5.2e-17 91.3 117 51.3
Lj3P716T36 Lonicera japonica HOM05D003236 ORTHO05D003620 5.2e-17 91.3 124 49.2
Atru.chr4.2535 Acer truncatum HOM05D003236 ORTHO05D003620 6.8e-17 90.9 95 58.9
Duzib147G0392 Durio zibethinus HOM05D003236 ORTHO05D003620 6.8e-17 90.9 96 55.2
RcHm_v2.0_Chr6g0272861 Rosa chinensis HOM05D003236 ORTHO05D003620 6.8e-17 90.9 125 49.6
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 8.9e-17 90.5 125 49.6
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 8.9e-17 90.5 106 53.8
THA.LOC104822305 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 8.9e-17 90.5 100 56.0
TPR.G7640 Trifolium pratense HOM05D003236 ORTHO05D003620 8.9e-17 90.5 94 57.4
THA.LOC104818806 Tarenaya hassleriana HOM05D003236 ORTHO05D003620 1.2e-16 90.1 122 51.6
COL.COLO4_26632 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.5e-16 89.7 117 50.4
Medtr2g022600 Medicago truncatula HOM05D003236 ORTHO05D003620 2.0e-16 89.4 94 55.3
HPP92_015138 Vanilla planifolia HOM05D003236 ORTHO05D003620 2.0e-16 89.4 99 57.6
AL6G30650 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 2.6e-16 89.0 118 50.8
Sed0017985 Sechium edule HOM05D003236 ORTHO05D003620 2.6e-16 89.0 125 47.2
Carub.0006s1753 Capsella rubella HOM05D003236 ORTHO05D003620 3.4e-16 88.6 106 53.8
COL.COLO4_05384 Corchorus olitorius HOM05D003236 ORTHO05D003620 4.4e-16 88.2 99 56.6
Psat1g182720 Pisum sativum HOM05D003236 ORTHO05D003620 4.4e-16 88.2 94 56.4
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 7.5e-16 87.4 124 49.2
RcHm_v2.0_Chr6g0272751 Rosa chinensis HOM05D003236 ORTHO05D003620 7.5e-16 87.4 93 58.1
Cfa015952 Carpinus fangiana HOM05D003236 ORTHO05D003620 9.8e-16 87.0 100 53.0
COL.COLO4_20855 Corchorus olitorius HOM05D003236 ORTHO05D003620 9.8e-16 87.0 100 51.0
MELO3C006553.2 Cucumis melo HOM05D003236 ORTHO05D003620 9.8e-16 87.0 92 57.6
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 9.8e-16 87.0 124 49.2
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 1.7e-15 86.3 92 56.5
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 1.7e-15 86.3 82 59.8
AL2G12120 Arabidopsis lyrata HOM05D003236 ORTHO05D003620 2.9e-15 85.5 87 62.1
Haze_00167 Corylus avellana HOM05D003236 ORTHO05D003620 2.9e-15 85.5 124 47.6
Duzib114G0214 Durio zibethinus HOM05D003236 ORTHO05D003620 2.9e-15 85.5 117 46.2
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 3.7e-15 85.1 96 57.3
Thhalv10014360m.g Eutrema salsugineum HOM05D003236 ORTHO05D003620 3.7e-15 85.1 118 50.8
Duzib199G0002 Durio zibethinus HOM05D003236 ORTHO05D003620 4.9e-15 84.7 117 45.3
Sed0022772 Sechium edule HOM05D003236 ORTHO05D003620 6.4e-15 84.3 76 60.5
Thecc.04G224800 Theobroma cacao HOM05D003236 ORTHO05D003620 6.4e-15 84.3 99 52.5
Thecc.04G224900 Theobroma cacao HOM05D003236 ORTHO05D003620 6.4e-15 84.3 103 50.5
Dinv38409 Davidia involucrata HOM05D003236 ORTHO05D003620 1.1e-14 83.6 106 51.9
Hma1.2p1_0447F.1_g154750 Hydrangea macrophylla HOM05D003236 ORTHO05D003620 1.1e-14 83.6 77 63.6
AT5G19200 Arabidopsis thaliana HOM05D003236 ORTHO05D003620 1.9e-14 82.8 118 48.3
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 2.4e-14 82.4 74 64.9
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 4.1e-14 81.6 92 54.3
RcHm_v2.0_Chr6g0272831 Rosa chinensis HOM05D003236 ORTHO05D003620 5.4e-14 81.3 112 48.2
CiPaw.01G161600 Carya illinoinensis HOM05D003236 ORTHO05D003620 1.2e-13 80.1 92 52.2
Eucgr.B01113 Eucalyptus grandis HOM05D003236 ORTHO05D003620 2.0e-13 79.3 74 59.5
Hund19505 Selenicereus undatus HOM05D003236 ORTHO05D003620 2.0e-13 79.3 86 55.8
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 2.0e-13 79.3 102 52.9
Gohir.D05G232700 Gossypium hirsutum HOM05D003236 ORTHO05D003620 2.7e-13 79.0 99 49.5
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 2.7e-13 79.0 99 49.5
Gorai.009G240900 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.7e-13 79.0 99 49.5
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 2.7e-13 79.0 99 49.5
ATR0626G169 Amborella trichopoda HOM05D003236 ORTHO05D003620 3.5e-13 78.6 108 52.8
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 3.5e-13 78.6 99 48.5
Ca_00632_v3 Cicer arietinum L. HOM05D003236 ORTHO05D003620 7.8e-13 77.4 74 58.1
RcHm_v2.0_Chr6g0272851 Rosa chinensis HOM05D003236 ORTHO05D003620 1.0e-12 77.0 107 44.9
COL.COLO4_05385 Corchorus olitorius HOM05D003236 ORTHO05D003620 1.7e-12 76.3 81 50.6
EL10Ac2g04006 Beta vulgaris HOM05D003236 ORTHO05D003620 2.3e-12 75.9 90 54.4
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 2.3e-12 75.9 98 46.9
Duzib147G0300 Durio zibethinus HOM05D003236 ORTHO05D003620 3.0e-12 75.5 89 52.8
Medtr3g098750 Medicago truncatula HOM05D003236 ORTHO05D003620 8.6e-12 73.9 90 53.3
Os02g0701900 Oryza sativa ssp. japonica HOM05D003236 ORTHO05D003620 8.6e-12 73.9 106 50.0
A10p20430 Brassica napus HOM05D003236 ORTHO05D003620 1.1e-11 73.6 95 51.6
COL.COLO4_20850 Corchorus olitorius HOM05D003236 ORTHO05D003620 7.3e-11 70.9 101 49.5
Zm00001eb188220 Zea mays HOM05D003236 ORTHO05D003620 1.2e-10 70.1 104 48.1
COL.COLO4_20849 Corchorus olitorius HOM05D003236 ORTHO05D003620 2.1e-10 69.3 101 46.5
AUR62042438 Chenopodium quinoa HOM05D003236 ORTHO05D003620 4.7e-10 68.2 61 62.3
AL159U10030 Arabidopsis lyrata HOM05D000915 ORTHO05D003011 2.3e-09 65.9 54 64.8
Ah.10g034980 Amaranthus hybridus HOM05D003236 ORTHO05D003620 6.8e-09 64.3 56 62.5
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 1.2e-08 63.5 101 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2320 Anthoceros agrestis HOM05D003236 ORTHO05D003620 2.0e-08 62.8 79 48.1
Glyma.12G174300 Glycine max HOM05D003236 ORTHO05D003620 4.1e-06 55.1 51 58.8


User provided reference genes

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