Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1708.0 843 100.0
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1368.6 774 86.3
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1347.8 778 85.6
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1238.0 833 74.1
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1221.1 755 77.4
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1216.8 808 73.8
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 822 73.0
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1201.8 826 71.8
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1201.0 767 75.1
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1201.0 745 76.5
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 846 69.9
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1198.3 800 72.8
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1197.6 800 72.8
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1196.4 751 76.0
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1196.4 749 76.2
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1195.6 813 72.2
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1194.1 816 71.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 784 73.6
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1192.2 750 75.1
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1191.0 809 72.1
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 811 72.3
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1189.9 748 75.9
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1187.9 816 71.7
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1187.9 814 71.7
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1187.6 822 70.3
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1187.6 739 76.3
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1185.6 815 71.3
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1184.1 796 72.5
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1183.7 813 71.2
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1181.8 839 69.6
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1179.5 743 74.8
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1179.1 784 72.6
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1177.9 781 71.7
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1176.0 762 73.4
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1174.5 826 69.9
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 808 71.5
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1173.3 841 69.0
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1172.5 820 69.9
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1170.6 821 70.0
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1169.8 747 73.6
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1169.5 782 72.4
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1168.7 745 74.4
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1167.9 745 74.4
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 747 73.4
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 749 73.7
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 752 73.4
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 785 72.6
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1162.1 851 69.6
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1162.1 770 73.1
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1162.1 806 70.1
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1159.4 796 71.5
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1159.1 807 70.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1155.2 834 68.7
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 799 70.3
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1152.9 807 70.0
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1152.9 811 70.2
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1151.0 818 69.1
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1149.4 815 68.2
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1140.6 829 67.7
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 843 68.3
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1136.3 844 67.2
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1131.7 807 69.3
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1130.9 797 69.0
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1130.5 819 68.4
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1129.4 785 70.2
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1125.2 792 69.1
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1120.9 859 66.5
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1120.5 821 68.3
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1119.4 774 71.3
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 807 68.2
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 811 68.4
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1115.9 793 68.5
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1115.1 805 68.2
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1114.8 812 68.5
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1111.7 773 69.9
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1109.0 748 71.3
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1108.6 793 68.5
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1094.0 789 67.0
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1088.6 686 76.4
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1085.9 817 65.6
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1079.3 702 72.8
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 2.3e-311 1072.0 758 70.6
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 1.5e-310 1069.3 689 74.5
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 1.5e-310 1069.3 694 73.8
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 4.4e-310 1067.8 816 66.8
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 5.3e-308 1060.8 744 70.2
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 5.0e-306 1054.3 770 67.8
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 6.5e-306 1053.9 868 61.8
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 7.7e-291 1003.8 898 59.0
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 1.1e-289 1000.0 683 70.9
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 3.2e-289 998.4 661 72.9
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.4e-284 983.0 625 75.7
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 4.3e-273 944.9 753 59.9
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.2e-272 943.3 745 60.7
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 2.2e-269 932.6 744 59.8
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 9.9e-254 880.6 608 69.2
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 3.3e-249 865.5 633 65.6
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.2e-244 849.0 620 66.1
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 4.0e-231 805.4 690 60.3
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-225 787.3 676 55.6
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 4.2e-212 742.3 521 67.9
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 5.9e-166 589.0 790 41.4
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 8.3e-144 515.4 354 66.9
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.6e-142 511.1 601 49.4
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.4e-119 434.9 350 63.7
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.2e-91 339.3 260 62.7
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.1e-87 328.9 286 60.8
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 7.4e-76 289.7 222 64.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.9e-72 277.7 251 57.8
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.1e-54 218.4 146 70.5
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.6e-44 184.9 127 67.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 4.4e-44 184.1 118 72.9
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 3.0e-40 171.4 136 56.6
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 8.9e-37 159.8 135 60.0
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.9e-31 142.1 92 76.1
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 3.0e-24 118.2 160 43.1
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.1e-23 116.3 107 50.5
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 2.6e-20 105.1 109 52.3
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 6.6e-16 90.5 58 72.4
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.5e-15 89.4 56 76.8
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 6.9e-13 80.5 46 80.4
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.2e-12 79.7 43 79.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 6.0e-09 67.4 58 62.1
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 8.7e-08 63.5 55 60.0
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 7.3e-07 60.5 47 68.1


User provided reference genes

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