Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-90 337.8 373 100.0
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-56 224.2 152 86.2
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 3.3e-44 183.3 176 63.6
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-41 174.9 158 62.7
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.0e-41 174.1 183 62.3
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.9e-39 167.5 154 68.8
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 3.2e-39 166.8 138 68.1
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 5.5e-39 166.0 142 65.5
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.1e-38 164.1 195 59.0
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-38 164.1 169 65.7
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.0e-37 161.8 139 73.4
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 1.0e-37 161.8 129 75.2
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.0e-37 161.8 169 65.7
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 2.3e-37 160.6 168 63.7
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.3e-37 160.6 169 63.3
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 2.3e-37 160.6 169 63.9
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 3.0e-37 160.2 170 63.5
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 3.0e-37 160.2 127 78.0
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 5.1e-37 159.5 171 62.0
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 5.1e-37 159.5 169 63.3
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.8e-37 158.7 129 76.7
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.8e-37 158.7 129 76.7
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 1.5e-36 157.9 172 62.2
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.5e-36 157.9 169 63.3
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.5e-36 157.9 171 62.0
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.5e-36 157.9 173 61.8
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 2.0e-36 157.5 170 62.9
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 2.0e-36 157.5 170 62.9
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.6e-36 157.1 129 71.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 3.3e-36 156.8 172 61.0
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 4.4e-36 156.4 167 62.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 4.4e-36 156.4 175 61.1
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 5.7e-36 156.0 171 60.8
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 5.7e-36 156.0 170 62.4
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 7.4e-36 155.6 170 62.4
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 7.4e-36 155.6 169 63.9
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 7.4e-36 155.6 170 62.4
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 7.4e-36 155.6 127 73.2
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 9.7e-36 155.2 169 62.1
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.3e-35 154.8 169 59.8
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.7e-35 154.5 172 60.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.2e-35 154.1 172 59.9
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.2e-35 154.1 170 62.4
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.2e-35 154.1 171 59.6
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 3.7e-35 153.3 169 62.1
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.7e-35 153.3 129 71.3
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 3.7e-35 153.3 169 61.5
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 6.3e-35 152.5 170 61.2
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 1.1e-34 151.8 127 74.0
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 1.4e-34 151.4 172 60.5
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.8e-34 151.0 127 74.8
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.8e-34 151.0 121 75.2
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.8e-34 151.0 214 44.4
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 2.4e-34 150.6 170 60.6
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 2.4e-34 150.6 127 74.0
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 3.1e-34 150.2 128 68.8
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 4.1e-34 149.8 142 67.6
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 4.1e-34 149.8 170 60.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 5.3e-34 149.4 168 60.7
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 5.3e-34 149.4 169 61.5
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 5.3e-34 149.4 171 60.8
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 5.3e-34 149.4 135 70.4
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 7.0e-34 149.1 125 72.8
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 7.0e-34 149.1 170 59.4
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 9.1e-34 148.7 128 74.2
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 9.1e-34 148.7 170 53.5
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 9.1e-34 148.7 171 62.0
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 2.0e-33 147.5 172 58.7
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 2.0e-33 147.5 167 58.7
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 4.5e-33 146.4 170 61.2
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 4.5e-33 146.4 123 74.8
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 5.9e-33 146.0 167 60.5
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 5.9e-33 146.0 172 58.1
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 5.9e-33 146.0 169 60.9
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 7.7e-33 145.6 168 60.7
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 7.7e-33 145.6 170 60.0
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 7.7e-33 145.6 169 59.8
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.0e-32 145.2 127 72.4
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.3e-32 144.8 189 56.1
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.7e-32 144.4 174 59.8
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 2.2e-32 144.1 126 73.0
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.2e-32 144.1 126 73.0
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.2e-32 144.1 183 56.8
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 2.9e-32 143.7 127 70.9
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 2.9e-32 143.7 167 59.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 2.9e-32 143.7 127 70.9
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 6.5e-32 142.5 171 57.3
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 8.5e-32 142.1 130 68.5
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 5.5e-31 139.4 171 57.9
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 5.5e-31 139.4 95 72.6
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.2e-31 139.0 118 70.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-30 138.3 97 75.3
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 1.2e-30 138.3 127 68.5
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.6e-30 137.9 146 52.7
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 2.1e-30 137.5 135 65.9
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.7e-30 137.1 96 75.0
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 2.7e-30 137.1 92 73.9
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.7e-30 137.1 190 50.0
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 4.7e-30 136.3 118 71.2
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 6.1e-30 136.0 127 69.3
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 3.9e-29 133.3 97 71.1
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 5.2e-29 132.9 95 67.4
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 2.0e-28 131.0 95 71.6
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.6e-28 130.6 171 55.6
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 7.4e-28 129.0 135 60.7
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.3e-27 128.3 132 62.1
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.7e-27 126.7 92 67.4
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 8.2e-27 125.6 97 64.9
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 1.1e-26 125.2 92 69.6
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.1e-26 123.6 134 60.4
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 5.3e-26 122.9 94 64.9
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 9.1e-26 122.1 148 55.4
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 9.1e-26 122.1 124 66.9
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 4.5e-25 119.8 128 62.5
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 5.0e-24 116.3 129 48.1
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 5.0e-24 116.3 94 61.7
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.9e-23 114.4 138 52.2
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 3.2e-23 113.6 129 56.6
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-22 111.7 117 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.6e-22 111.3 90 57.8
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 4.7e-22 109.8 142 54.2
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-21 108.2 131 57.3
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-21 107.8 131 53.4
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-20 105.1 91 58.2
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 9.7e-20 102.1 122 56.6
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 4.8e-19 99.8 85 56.5
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 4.5e-17 93.2 93 51.6
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 8.5e-16 89.0 73 61.6
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 9.4e-15 85.5 170 37.6
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.4e-15 85.5 80 78.8
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-14 85.1 138 37.7
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-14 84.3 108 43.5
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 2.3e-13 80.9 51 70.6
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 4.0e-13 80.1 169 38.5
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 5.2e-13 79.7 105 61.0
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.2e-13 79.7 120 40.8
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 6.8e-13 79.3 116 40.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.8e-13 79.3 107 43.9
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-12 78.6 51 68.6
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.5e-12 78.2 129 39.5
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-12 77.8 116 40.5
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.6e-12 77.4 118 51.7
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.3e-11 75.1 117 41.0
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.8e-11 73.2 113 42.5
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-10 71.6 55 63.6
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.8e-10 71.2 47 70.2
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.0e-09 67.8 121 47.9
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.7e-09 67.4 50 66.0
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.7e-09 67.4 71 50.7
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 4.5e-09 66.6 66 53.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.5e-09 66.6 66 53.0
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.9e-09 66.2 60 53.3
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 2.3e-08 64.3 55 61.8
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 8.6e-08 62.4 47 59.6
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 8.6e-08 62.4 52 59.6
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-07 61.2 83 48.2
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 4.2e-07 60.1 30 76.7
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 4.2e-07 60.1 139 44.6
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 4.7e-06 56.6 25 88.0
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.7e-06 56.6 67 47.8


User provided reference genes

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