Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 9.6e-37 156.4 82 100.0
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 3.0e-30 134.8 78 89.7
HanXRQChr12g0369131 Helianthus annuus HOM05D000515 ORTHO05D022581 4.6e-15 84.3 47 87.2
HanXRQChr11g0348001 Helianthus annuus HOM05D003950 ORTHO05D004697 5.1e-14 80.9 74 67.6
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 6.7e-14 80.5 80 58.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 3.3e-13 78.2 65 63.1
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.3e-13 77.8 78 57.7
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 2.1e-12 75.5 81 54.3
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.1e-12 75.5 81 55.6
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 6.2e-12 73.9 81 53.1
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.4e-11 72.8 81 50.6
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-11 72.8 109 44.0
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.8e-11 72.4 81 50.6
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 4.0e-11 71.2 81 53.1
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 6.9e-11 70.5 78 55.1
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 6.9e-11 70.5 81 51.9
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 6.9e-11 70.5 81 51.9
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 9.0e-11 70.1 78 53.8
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 9.0e-11 70.1 81 51.9
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 9.0e-11 70.1 81 51.9
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.5e-10 69.3 81 50.6
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.0e-10 68.9 81 50.6
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 2.0e-10 68.9 78 52.6
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.0e-10 68.9 81 50.6
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 2.0e-10 68.9 81 53.1
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 2.6e-10 68.6 81 49.4
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 2.6e-10 68.6 78 50.0
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 2.6e-10 68.6 78 51.3
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 3.4e-10 68.2 81 50.6
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 5.8e-10 67.4 78 52.6
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 7.6e-10 67.0 81 51.9
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 7.6e-10 67.0 78 52.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.0e-09 66.6 78 51.3
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.0e-09 66.6 78 51.3
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.0e-09 66.6 78 51.3
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 1.3e-09 66.2 81 48.1
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-09 66.2 71 60.6
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.7e-09 65.9 81 48.1
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 1.7e-09 65.9 78 51.3
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.7e-09 65.9 81 48.1
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.2e-09 65.5 81 46.9
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 2.2e-09 65.5 81 46.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 2.2e-09 65.5 81 46.9
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 2.2e-09 65.5 78 50.0
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 2.2e-09 65.5 81 49.4
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.9e-09 65.1 78 50.0
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 2.9e-09 65.1 78 51.3
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.9e-09 65.1 78 53.8
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.9e-09 65.1 78 50.0
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.9e-09 65.1 78 50.0
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 2.9e-09 65.1 78 50.0
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 3.8e-09 64.7 80 47.5
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 3.8e-09 64.7 78 50.0
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 5.0e-09 64.3 81 48.1
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 6.5e-09 63.9 37 89.2
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 6.5e-09 63.9 82 47.6
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 6.5e-09 63.9 81 45.7
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 8.4e-09 63.5 81 45.7
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 8.4e-09 63.5 78 48.7
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 1.1e-08 63.2 81 48.1
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-08 63.2 79 48.1
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 1.1e-08 63.2 71 54.9
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.4e-08 62.8 81 45.7
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.4e-08 62.8 81 45.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.4e-08 62.8 81 45.7
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.4e-08 62.8 78 47.4
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.4e-08 62.8 78 48.7
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.9e-08 62.4 77 48.1
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.5e-08 62.0 40 72.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 2.5e-08 62.0 78 48.7
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 3.2e-08 61.6 78 48.7
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 4.2e-08 61.2 78 47.4
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.2e-08 61.2 80 47.5
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 5.5e-08 60.8 81 44.4
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 5.5e-08 60.8 76 48.7
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 1.6e-07 59.3 70 51.4
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 2.7e-07 58.5 78 48.7
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.5e-07 58.2 137 31.4
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 4.6e-07 57.8 74 47.3
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 4.6e-07 57.8 78 47.4
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 6.1e-07 57.4 40 67.5
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 6.1e-07 57.4 78 47.4
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-06 56.2 71 43.7
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 1.8e-06 55.8 78 46.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 3.9e-06 54.7 81 43.2
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.1e-06 54.3 40 67.5
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 6.7e-06 53.9 78 39.7
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 6.7e-06 53.9 78 44.9
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 6.7e-06 53.9 70 50.0
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 8.7e-06 53.5 78 44.9


User provided reference genes

Program Settings