Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 6.0e-96 354.4 173 100.0
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 2.7e-64 249.2 172 73.3
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 4.6e-56 221.9 175 69.1
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 4.8e-53 211.8 150 74.0
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.8e-52 209.9 153 73.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 3.1e-52 209.1 175 63.4
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 4.0e-52 208.8 173 66.5
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 5.3e-52 208.4 176 63.6
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-51 206.8 172 66.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 2.0e-51 206.5 119 87.4
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 4.5e-51 205.3 167 65.3
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 7.6e-51 204.5 173 63.0
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.0e-50 204.1 172 59.9
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 3.8e-50 202.2 175 62.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.9e-50 201.8 173 61.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 4.9e-50 201.8 173 62.4
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-49 200.3 165 64.2
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-49 200.3 173 61.8
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.5e-49 199.5 173 62.4
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 3.2e-49 199.1 175 61.7
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 4.2e-49 198.7 173 61.3
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 4.2e-49 198.7 173 61.8
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 4.2e-49 198.7 173 61.3
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 4.2e-49 198.7 172 61.0
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 5.5e-49 198.4 173 60.7
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 7.1e-49 198.0 175 60.6
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 9.3e-49 197.6 174 58.6
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 9.3e-49 197.6 173 61.8
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 9.3e-49 197.6 168 62.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.7e-48 196.1 173 61.3
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 3.5e-48 195.7 173 60.7
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 4.6e-48 195.3 173 60.1
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.0e-48 194.9 168 61.3
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 6.0e-48 194.9 171 61.4
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.0e-47 194.1 173 60.1
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.0e-47 194.1 173 59.5
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 1.0e-47 194.1 173 60.1
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.0e-47 194.1 173 59.5
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 1.8e-47 193.4 173 59.5
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 2.3e-47 193.0 174 59.8
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 3.0e-47 192.6 170 61.8
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 5.1e-47 191.8 173 59.5
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.9e-46 189.9 172 59.9
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.9e-46 189.9 172 59.3
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.5e-46 189.5 173 60.1
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 3.3e-46 189.1 173 60.7
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 3.3e-46 189.1 157 63.7
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.3e-46 189.1 174 59.2
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 5.7e-46 188.3 173 58.4
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 5.7e-46 188.3 173 59.0
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 5.7e-46 188.3 173 58.4
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.3e-45 187.2 172 58.7
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.3e-45 187.2 192 55.7
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 2.1e-45 186.4 172 57.6
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.1e-45 186.4 168 59.5
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.8e-45 186.0 230 50.0
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 3.7e-45 185.7 157 65.0
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 4.8e-45 185.3 173 57.8
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 4.8e-45 185.3 186 55.4
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 6.3e-45 184.9 168 59.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 1.5e-43 180.3 177 57.1
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.5e-43 180.3 172 55.8
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.6e-43 179.5 155 61.9
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.6e-43 179.5 173 57.2
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.4e-43 179.1 173 57.2
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.3e-42 177.2 174 54.0
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-42 177.2 158 62.7
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.7e-42 176.8 180 57.2
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 2.2e-42 176.4 171 55.0
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 2.2e-42 176.4 171 55.0
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 2.9e-42 176.0 172 55.2
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 5.0e-42 175.3 211 49.3
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 5.0e-42 175.3 155 60.6
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.5e-42 174.5 163 58.3
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.4e-41 173.7 165 58.8
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.9e-41 173.3 172 54.1
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 5.5e-41 171.8 186 54.3
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 7.2e-41 171.4 172 53.5
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 9.3e-41 171.0 146 62.3
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 9.3e-41 171.0 125 72.8
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 2.7e-40 169.5 164 56.1
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 2.7e-40 169.5 174 55.7
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 2.7e-40 169.5 140 66.4
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 3.6e-40 169.1 156 60.3
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 4.6e-40 168.7 173 54.9
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 7.9e-40 167.9 224 45.5
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.3e-39 167.2 164 55.5
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.3e-39 166.4 161 57.1
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 6.7e-39 164.9 114 76.3
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 8.7e-39 164.5 142 64.8
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 8.7e-39 164.5 138 67.4
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.5e-38 163.7 120 71.7
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.5e-38 162.9 174 54.6
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.8e-37 159.5 148 59.5
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 8.2e-37 157.9 174 54.0
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.4e-36 157.1 136 61.8
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 1.8e-36 156.8 120 69.2
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.4e-36 156.4 175 49.7
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 4.1e-36 155.6 153 56.2
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 6.9e-36 154.8 112 75.0
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 6.9e-36 154.8 142 63.4
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 9.0e-36 154.5 146 55.5
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.6e-35 152.9 135 62.2
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 4.5e-35 152.1 137 60.6
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.9e-34 149.4 171 50.9
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 8.5e-34 147.9 172 51.2
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.4e-33 147.1 153 57.5
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 5.5e-33 145.2 161 52.8
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.6e-32 142.1 152 53.3
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.8e-31 140.2 172 49.4
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 2.3e-31 139.8 176 48.3
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 5.1e-31 138.7 166 49.4
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 2.0e-30 136.7 112 64.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 5.7e-30 135.2 119 59.7
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 5.7e-30 135.2 78 89.7
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 9.7e-30 134.4 142 56.3
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.8e-29 132.9 176 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.1e-28 131.0 172 43.0
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.4e-28 130.6 136 52.9
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 2.4e-28 129.8 158 50.0
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 3.1e-28 129.4 159 47.8
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.1e-28 129.0 115 60.0
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 6.9e-28 128.3 113 60.2
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 4.5e-27 125.6 148 48.6
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 1.0e-26 124.4 112 58.9
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 2.2e-26 123.2 142 50.7
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.0e-26 122.1 112 58.9
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.2e-25 119.4 119 54.6
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.6e-24 117.1 137 49.6
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.0e-23 114.4 135 48.9
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 2.3e-23 113.2 133 48.9
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.3e-23 113.2 138 46.4
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.2e-23 112.1 172 42.4
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.8e-23 111.3 129 48.8
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.6e-22 109.8 133 46.6
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.2e-19 100.9 141 43.3
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-19 99.4 158 40.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.9e-19 98.6 133 45.9
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.7e-18 97.1 64 75.0
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.8e-18 95.9 172 40.7
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 6.5e-18 95.1 141 44.0
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.5e-17 94.0 65 69.2
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 2.5e-17 93.2 70 67.1
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-16 90.9 70 65.7
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 4.0e-15 85.9 156 39.1
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-14 84.3 198 32.3
HanXRQChr12g0369131 Helianthus annuus HOM05D000515 ORTHO05D022581 5.7e-14 82.0 46 84.8
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 7.5e-14 81.6 79 59.5
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.5e-14 81.6 100 47.0
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 3.7e-13 79.3 151 35.8
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.7e-13 79.3 151 35.8
HanXRQChr11g0348001 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-12 77.8 71 66.2
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 1.1e-12 77.8 118 43.2
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 9.1e-12 74.7 66 57.6
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.1e-12 74.7 77 53.2
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 2.0e-11 73.6 49 67.3
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-10 70.5 63 57.1
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 2.2e-10 70.1 49 67.3
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.5e-10 68.6 71 53.5
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.5e-10 68.2 129 39.5
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-09 67.4 121 38.8
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 4.2e-09 65.9 55 61.8
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.4e-09 64.7 55 60.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 9.4e-09 64.7 57 52.6
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 6.8e-07 58.5 85 41.2
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-06 57.8 63 47.6
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 2.0e-06 57.0 36 66.7
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.7e-06 55.5 106 34.9
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.8e-06 54.7 43 58.1
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.8e-06 54.7 80 41.2


User provided reference genes

Program Settings