Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-80 302.8 238 100.0
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 8.9e-59 231.1 146 84.2
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-53 214.2 147 76.2
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 7.3e-53 211.5 146 77.4
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 4.4e-50 202.2 142 73.2
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.3e-49 200.7 141 74.5
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-48 197.6 147 70.1
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.4e-48 197.2 135 77.0
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 4.1e-48 195.7 146 71.2
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 9.2e-48 194.5 140 72.9
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-47 193.7 141 74.5
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.1e-47 193.4 134 73.1
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 3.5e-47 192.6 140 71.4
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 4.6e-47 192.2 147 68.7
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 7.8e-47 191.4 137 70.1
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 7.8e-47 191.4 147 67.3
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.0e-46 191.0 147 70.7
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 1.3e-46 190.7 138 68.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 3.0e-46 189.5 145 66.9
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 3.0e-46 189.5 142 69.0
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 5.1e-46 188.7 140 69.3
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 6.6e-46 188.3 146 67.1
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.1e-45 187.6 147 66.7
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.5e-45 187.2 139 68.3
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.5e-45 187.2 147 65.3
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 2.5e-45 186.4 147 64.6
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 3.3e-45 186.0 138 69.6
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.3e-45 185.7 139 68.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 5.6e-45 185.3 144 66.0
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 5.6e-45 185.3 139 69.1
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 5.6e-45 185.3 137 68.6
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 7.3e-45 184.9 147 64.6
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 7.3e-45 184.9 145 65.5
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 1.2e-44 184.1 145 66.2
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.2e-44 184.1 144 68.8
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 1.6e-44 183.7 145 65.5
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.6e-44 183.7 144 65.3
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.1e-44 183.3 146 65.1
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 2.1e-44 183.3 147 66.0
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.6e-44 182.6 139 67.6
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.6e-44 182.6 140 69.3
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 4.7e-44 182.2 145 64.8
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 4.7e-44 182.2 137 67.9
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 4.7e-44 182.2 136 66.9
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 8.1e-44 181.4 155 60.6
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-43 181.0 147 64.6
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.4e-43 180.6 139 66.9
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.8e-43 180.3 143 67.8
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.8e-43 180.3 143 67.8
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.3e-43 179.9 135 65.2
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 3.1e-43 179.5 129 68.2
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 3.1e-43 179.5 137 67.9
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 4.0e-43 179.1 139 66.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 4.0e-43 179.1 128 66.4
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 5.2e-43 178.7 149 63.1
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 8.9e-43 177.9 136 66.9
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 8.9e-43 177.9 139 67.6
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 8.9e-43 177.9 137 69.3
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.2e-42 177.6 164 61.0
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 2.6e-42 176.4 143 66.4
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 3.4e-42 176.0 148 62.8
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 5.8e-42 175.3 144 61.8
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 5.8e-42 175.3 139 66.9
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 9.9e-42 174.5 138 63.8
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 1.7e-41 173.7 135 68.1
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.2e-41 173.3 132 65.2
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.9e-41 172.2 117 73.5
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.9e-41 172.2 147 61.2
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 6.4e-41 171.8 147 63.3
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.4e-40 169.9 132 68.2
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 2.4e-40 169.9 139 65.5
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.4e-40 169.9 139 65.5
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.2e-40 169.5 139 65.5
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 5.4e-40 168.7 150 62.0
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.2e-39 167.5 143 60.1
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.6e-39 167.2 136 64.0
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-39 167.2 114 78.1
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.7e-39 166.4 142 62.7
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 4.6e-39 165.6 142 62.7
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 4.6e-39 165.6 147 59.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 4.6e-39 165.6 147 59.9
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 4.6e-39 165.6 147 61.9
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.7e-38 163.7 139 63.3
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-38 163.7 113 76.1
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.3e-38 163.3 140 61.4
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.3e-38 163.3 177 55.4
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 2.3e-38 163.3 114 76.3
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 3.0e-38 162.9 143 60.8
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 3.0e-38 162.9 144 59.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 3.9e-38 162.5 133 63.2
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 3.9e-38 162.5 152 57.2
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 3.9e-38 162.5 138 61.6
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 6.6e-38 161.8 139 61.2
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 6.6e-38 161.8 138 61.6
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 1.5e-37 160.6 143 60.1
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.5e-37 160.6 143 59.4
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-37 160.6 113 75.2
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 5.6e-37 158.7 119 72.3
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 5.6e-37 158.7 147 59.2
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 5.6e-37 158.7 142 59.2
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-36 157.1 152 55.9
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.1e-36 156.8 123 65.0
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 4.7e-36 155.6 143 60.8
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 8.1e-36 154.8 141 58.2
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.4e-35 154.1 136 62.5
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.8e-35 153.7 146 54.8
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 3.1e-35 152.9 139 61.2
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 6.8e-35 151.8 122 63.1
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 6.8e-35 151.8 143 55.2
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.5e-34 150.6 136 59.6
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 2.6e-34 149.8 112 68.8
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 5.8e-34 148.7 205 45.4
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.6e-34 148.3 137 55.5
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 9.9e-34 147.9 100 71.0
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.7e-33 147.1 144 55.6
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 7.1e-32 141.7 98 73.5
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 7.1e-32 141.7 112 65.2
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 2.1e-31 140.2 133 56.4
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-30 137.9 96 75.0
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 1.7e-30 137.1 141 51.8
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 3.3e-29 132.9 108 64.8
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.6e-29 131.3 138 52.2
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.3e-27 125.6 137 49.6
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.6e-26 123.2 94 67.0
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 5.8e-26 122.1 147 50.3
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.9e-26 121.3 87 71.3
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.3e-25 120.9 93 68.8
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.7e-25 120.6 94 68.1
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 4.9e-25 119.0 140 52.1
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 4.9e-25 119.0 94 66.0
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 8.4e-25 118.2 88 68.2
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 1.1e-24 117.9 147 48.3
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-24 117.9 139 51.8
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.9e-24 117.1 88 67.0
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.9e-24 117.1 147 49.7
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.2e-24 116.3 98 61.2
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.4e-24 115.5 153 48.4
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 7.1e-24 115.2 139 50.4
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.6e-23 114.0 147 46.3
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.0e-23 112.1 149 49.0
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 5.1e-22 109.0 98 58.2
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 5.1e-22 109.0 106 56.6
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 3.3e-21 106.3 146 44.5
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.3e-21 105.1 138 45.7
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.8e-20 103.2 105 51.4
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.6e-20 102.8 112 54.5
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.1e-19 101.3 67 71.6
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.1e-19 101.3 113 54.0
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.5e-18 95.9 116 44.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.3e-17 94.4 91 56.0
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.7e-17 94.0 65 67.7
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.4e-16 90.1 107 49.5
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.1e-16 88.6 156 39.7
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.9e-14 82.8 114 43.9
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.7e-14 82.0 68 58.8
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-13 80.9 141 39.7
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 7.4e-13 78.6 49 73.5
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 8.1e-12 75.1 49 69.4
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 4.0e-11 72.8 78 50.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.0e-11 72.8 78 50.0
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 2.0e-10 70.5 64 53.1
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 2.2e-09 67.0 116 38.8
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.6e-07 60.8 61 55.7
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.1e-07 60.5 111 38.7
Gohir.D03G150366 Gossypium hirsutum HOM05D001221 ORTHO05D006671 7.9e-07 58.5 109 33.0
Gorai.003G157600 Gossypium raimondii HOM05D001221 ORTHO05D006671 7.9e-07 58.5 109 33.0
Rhsim05G0207300 Rhododendron simsii HOM05D001221 ORTHO05D009285 1.0e-06 58.2 89 42.7
Gohir.A03G017600 Gossypium hirsutum HOM05D001221 ORTHO05D006671 1.3e-06 57.8 109 32.1
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 1.8e-06 57.4 39 66.7
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.3e-06 57.0 138 34.8
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 2.3e-06 57.0 124 35.5
Thhalv10020689m.g Eutrema salsugineum HOM05D001221 ORTHO05D009285 3.0e-06 56.6 92 39.1
Manes.09G103400 Manihot esculenta HOM05D001221 ORTHO05D009285 3.9e-06 56.2 86 43.0
Thecc.03G281300 Theobroma cacao HOM05D001221 ORTHO05D006671 5.1e-06 55.8 96 35.4
BcaC05g29636 Brassica carinata HOM05D001221 ORTHO05D009285 6.7e-06 55.5 95 37.9
Gohir.A12G230400 Gossypium hirsutum HOM05D001221 ORTHO05D006671 6.7e-06 55.5 96 35.4


User provided reference genes

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