Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-91 340.1 263 100.0
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 9.8e-59 231.1 146 84.2
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 4.0e-52 209.1 176 65.9
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.2e-50 203.4 177 71.8
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 8.3e-50 201.4 174 71.3
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 8.3e-50 201.4 174 70.7
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 1.5e-46 190.7 176 67.0
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 7.3e-46 188.3 176 64.8
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.2e-45 187.6 176 66.5
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 2.8e-45 186.4 176 63.6
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.8e-45 186.4 176 63.6
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 4.7e-45 185.7 169 65.7
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 6.2e-45 185.3 176 62.5
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 8.1e-45 184.9 168 65.5
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 8.1e-45 184.9 174 63.2
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.1e-44 184.5 168 63.1
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.4e-44 184.1 177 63.3
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 3.1e-44 183.0 169 64.5
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 3.1e-44 183.0 174 63.2
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 5.2e-44 182.2 173 61.3
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 5.2e-44 182.2 173 61.3
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 5.2e-44 182.2 167 65.3
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 5.2e-44 182.2 176 60.8
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.2e-43 181.0 169 63.3
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-43 181.0 169 63.9
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.0e-43 180.3 174 61.5
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 2.0e-43 180.3 168 64.9
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 2.0e-43 180.3 165 61.8
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 2.0e-43 180.3 169 63.9
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.6e-43 179.9 168 64.3
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 2.6e-43 179.9 176 59.7
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 3.4e-43 179.5 174 60.9
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 3.4e-43 179.5 173 62.4
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.4e-43 179.5 174 57.5
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 4.4e-43 179.1 168 64.9
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 5.8e-43 178.7 165 62.4
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 5.8e-43 178.7 174 60.3
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 5.8e-43 178.7 173 64.7
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 5.8e-43 178.7 174 62.1
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 7.5e-43 178.3 176 62.5
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 7.5e-43 178.3 166 67.5
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 1.3e-42 177.6 169 61.5
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.3e-42 177.6 169 60.9
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.3e-42 177.6 169 62.7
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 1.3e-42 177.6 174 60.9
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.3e-42 177.6 178 61.2
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 1.3e-42 177.6 144 61.8
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.3e-42 177.6 139 65.5
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 1.7e-42 177.2 178 60.7
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.2e-42 176.8 152 60.5
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.2e-42 176.8 176 59.1
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.9e-42 176.4 175 59.4
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 6.4e-42 175.3 165 64.8
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 6.4e-42 175.3 168 62.5
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 6.4e-42 175.3 167 62.9
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 6.4e-42 175.3 174 59.2
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 8.3e-42 174.9 169 62.1
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 8.3e-42 174.9 168 63.7
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 1.1e-41 174.5 167 61.7
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.9e-41 173.7 169 60.9
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.9e-41 173.7 168 66.1
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 2.4e-41 173.3 169 58.6
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 2.4e-41 173.3 193 56.5
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.4e-41 173.3 168 63.7
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 5.4e-41 172.2 164 61.6
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 7.1e-41 171.8 168 61.3
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 7.1e-41 171.8 172 62.2
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 7.1e-41 171.8 172 62.2
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 7.1e-41 171.8 168 63.1
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 1.6e-40 170.6 133 63.9
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.1e-40 170.2 168 62.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 2.1e-40 170.2 176 61.4
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.1e-40 170.2 144 61.8
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.1e-40 170.2 167 60.5
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.7e-40 169.9 133 65.4
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 3.5e-40 169.5 169 58.6
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 3.5e-40 169.5 176 59.7
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 4.6e-40 169.1 175 59.4
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 7.8e-40 168.3 172 61.6
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.3e-39 166.8 159 66.0
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.9e-39 166.0 151 65.6
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 3.9e-39 166.0 169 60.9
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.9e-39 166.0 169 60.9
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 3.9e-39 166.0 173 51.4
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.1e-39 165.6 169 60.9
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.1e-39 165.6 130 65.4
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 6.6e-39 165.2 174 62.6
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.1e-38 164.5 169 62.1
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.9e-38 163.7 172 61.6
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 1.9e-38 163.7 175 55.4
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 3.3e-38 162.9 130 62.3
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 4.3e-38 162.5 165 60.6
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.6e-37 160.6 159 64.8
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-37 160.2 141 58.2
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.8e-37 159.8 176 54.0
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.7e-37 159.1 196 54.6
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 4.7e-37 159.1 180 57.2
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.4e-36 157.5 171 58.5
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 3.1e-36 156.4 143 56.6
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 5.2e-36 155.6 174 58.6
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 8.9e-36 154.8 142 63.4
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.0e-35 153.7 139 59.7
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.6e-35 153.3 152 61.8
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 3.4e-35 152.9 109 72.5
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 5.8e-35 152.1 170 56.5
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 7.6e-35 151.8 98 71.4
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 1.3e-34 151.0 134 59.0
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 6.4e-34 148.7 141 64.5
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 8.4e-34 148.3 137 68.6
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.4e-33 145.6 170 48.8
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 9.2e-33 144.8 109 70.6
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.2e-32 144.4 165 57.0
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 2.7e-32 143.3 96 74.0
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 7.8e-32 141.7 140 52.9
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-31 140.6 114 69.3
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-31 140.6 135 54.1
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 5.6e-30 135.6 109 67.0
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 9.6e-30 134.8 202 43.1
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 3.6e-29 132.9 162 52.5
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 6.9e-28 128.6 137 59.9
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.4e-27 125.9 133 50.4
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 9.9e-27 124.8 171 46.8
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.9e-26 122.5 85 70.6
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 8.4e-26 121.7 128 62.5
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.4e-25 120.2 123 63.4
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.4e-25 120.2 168 47.6
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 3.2e-25 119.8 86 67.4
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 7.1e-25 118.6 86 66.3
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 7.1e-25 118.6 123 61.0
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.3e-25 118.2 132 47.7
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.2e-24 117.9 96 61.5
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 3.5e-24 116.3 123 60.2
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.0e-23 114.8 123 59.3
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.0e-23 113.2 163 44.2
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 3.9e-23 112.8 96 58.3
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 1.5e-22 110.9 156 44.9
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.3e-22 109.8 172 40.7
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.3e-22 109.8 182 41.8
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 5.6e-22 109.0 176 44.3
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 7.3e-22 108.6 141 47.5
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 9.6e-22 108.2 100 57.0
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.8e-21 105.9 108 52.8
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-20 104.8 126 50.8
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.1e-20 103.2 162 39.5
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.1e-20 103.2 89 57.3
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 5.3e-20 102.4 171 45.6
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-19 101.3 72 66.7
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 1.5e-19 100.9 104 53.8
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 5.8e-19 99.0 132 53.8
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 5.8e-19 99.0 89 57.3
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.6e-16 90.9 112 45.5
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.0e-16 89.0 111 45.9
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 2.8e-13 80.1 54 68.5
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.8e-13 79.3 139 38.1
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.1e-13 78.6 67 56.7
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-12 77.8 139 39.6
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 3.1e-12 76.6 54 64.8
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.1e-12 76.6 114 43.0
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 2.6e-11 73.6 64 56.2
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 2.2e-10 70.5 83 45.8
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.2e-10 70.5 83 45.8
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 1.9e-09 67.4 115 41.7
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 8.7e-07 58.5 107 43.9
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 5.6e-06 55.8 39 64.1
Cre13.g579017 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 7.4e-06 55.5 65 47.7
ClCG08G009430 Citrullus lanatus HOM05D003419 ORTHO05D004113 7.4e-06 55.5 107 35.5
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 9.6e-06 55.1 87 35.6


User provided reference genes

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