Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-59 233.4 193 100.0
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 7.2e-51 204.5 110 92.7
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-48 196.8 115 87.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 7.5e-40 167.9 112 79.5
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 6.3e-39 164.9 109 77.1
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 7.0e-38 161.4 110 70.9
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-37 160.2 113 75.2
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 4.5e-37 158.7 110 70.0
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 7.7e-37 157.9 110 70.9
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 7.7e-37 157.9 112 75.9
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.0e-36 157.5 107 75.7
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.3e-36 157.1 114 74.6
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.9e-36 156.0 110 67.3
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 2.9e-36 156.0 111 73.0
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 2.9e-36 156.0 110 70.0
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 6.6e-36 154.8 110 70.0
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.1e-35 154.1 110 69.1
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.1e-35 154.1 110 69.1
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 1.5e-35 153.7 110 68.2
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 1.5e-35 153.7 110 69.1
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 3.3e-35 152.5 110 70.0
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 3.3e-35 152.5 110 68.2
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 3.3e-35 152.5 108 73.1
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 3.3e-35 152.5 112 75.0
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 4.2e-35 152.1 115 68.7
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 4.2e-35 152.1 115 68.7
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 4.2e-35 152.1 109 68.8
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 4.2e-35 152.1 110 68.2
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 5.5e-35 151.8 110 67.3
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.2e-35 151.4 110 70.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 7.2e-35 151.4 110 68.2
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 7.2e-35 151.4 110 68.2
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 9.5e-35 151.0 110 67.3
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-34 150.6 110 66.4
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.1e-34 149.8 109 67.0
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.8e-34 149.4 110 67.3
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.8e-34 149.4 107 68.2
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.8e-34 149.4 110 66.4
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 3.6e-34 149.1 108 66.7
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 3.6e-34 149.1 110 67.3
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 3.6e-34 149.1 110 67.3
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.6e-34 149.1 111 68.5
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 3.6e-34 149.1 109 67.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.6e-34 149.1 111 68.5
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.7e-34 148.7 99 71.7
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.7e-34 148.7 99 71.7
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 4.7e-34 148.7 112 71.4
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 4.7e-34 148.7 110 67.3
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 4.7e-34 148.7 110 67.3
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 4.7e-34 148.7 109 67.9
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.1e-34 148.3 110 66.4
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.0e-33 147.5 110 65.5
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 1.0e-33 147.5 112 66.1
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 1.4e-33 147.1 110 67.3
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.4e-33 147.1 114 65.8
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.3e-33 146.4 110 65.5
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.3e-33 146.4 110 63.6
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 2.3e-33 146.4 110 64.5
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 3.0e-33 146.0 110 63.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 5.2e-33 145.2 109 66.1
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 5.2e-33 145.2 107 66.4
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 8.9e-33 144.4 109 64.2
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 8.9e-33 144.4 113 64.6
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 8.9e-33 144.4 109 66.1
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.2e-32 144.1 114 66.7
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.2e-32 144.1 107 67.3
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.2e-32 144.1 110 63.6
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-32 143.7 109 70.6
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 2.0e-32 143.3 109 63.3
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 2.0e-32 143.3 109 66.1
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 2.6e-32 142.9 110 67.3
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 7.5e-32 141.4 110 63.6
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 7.5e-32 141.4 110 65.5
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 7.5e-32 141.4 110 61.8
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 9.8e-32 141.0 109 66.1
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 9.8e-32 141.0 110 65.5
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.2e-31 139.8 103 66.0
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 3.7e-31 139.0 99 69.7
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 3.7e-31 139.0 114 64.0
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 4.9e-31 138.7 110 64.5
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 8.3e-31 137.9 110 64.5
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.3e-31 137.9 110 64.5
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.3e-31 137.9 110 64.5
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.4e-30 137.1 110 60.0
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.4e-30 137.1 107 65.4
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.4e-30 137.1 99 66.7
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.8e-30 136.7 123 56.9
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 2.4e-30 136.3 106 63.2
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 2.4e-30 136.3 129 56.6
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.2e-30 136.0 110 61.8
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 9.2e-30 134.4 110 60.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 9.2e-30 134.4 110 60.9
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 9.2e-30 134.4 120 58.3
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.2e-29 134.0 110 60.0
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 1.6e-29 133.7 110 60.9
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 2.0e-29 133.3 97 71.1
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.7e-29 132.9 140 54.3
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 2.7e-29 132.9 116 61.2
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 3.5e-29 132.5 110 60.0
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 3.5e-29 132.5 110 60.0
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 4.6e-29 132.1 110 60.9
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 4.6e-29 132.1 110 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 5.9e-29 131.7 110 59.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.9e-29 131.7 110 60.9
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.3e-28 130.6 110 59.1
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.7e-28 130.2 110 60.0
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.3e-28 129.8 95 68.4
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.3e-28 129.8 92 67.4
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 2.3e-28 129.8 112 60.7
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 3.9e-28 129.0 92 69.6
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 5.0e-28 128.6 110 58.2
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 8.6e-28 127.9 110 60.9
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.1e-27 127.5 97 64.9
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 1.9e-27 126.7 111 61.3
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 4.3e-27 125.6 112 58.0
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.6e-27 125.2 110 58.2
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 2.1e-26 123.2 92 65.2
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 6.1e-26 121.7 115 57.4
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 2.6e-24 116.3 116 55.2
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 5.8e-24 115.2 118 55.1
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-23 113.6 99 58.6
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 6.4e-23 111.7 108 52.8
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.4e-22 110.5 111 55.9
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 1.4e-22 110.5 110 52.7
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 9.2e-22 107.8 110 51.8
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 9.2e-22 107.8 65 80.0
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.7e-21 106.3 65 76.9
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.5e-19 99.8 114 49.1
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 9.5e-19 97.8 110 50.0
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.5e-19 97.8 63 71.4
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 2.1e-18 96.7 111 50.5
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 2.8e-18 96.3 68 72.1
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 8.1e-18 94.7 110 50.0
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 1.4e-17 94.0 68 70.6
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.1e-17 92.8 63 74.6
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-16 90.9 123 43.9
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 5.8e-16 88.6 112 43.8
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.8e-16 88.6 83 56.6
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.8e-16 87.8 112 43.8
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.7e-15 87.0 77 61.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.7e-15 85.9 111 46.8
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.9e-14 83.6 111 45.9
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.4e-14 83.2 62 62.9
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-13 80.1 113 46.0
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 1.0e-12 77.8 54 70.4
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 6.6e-12 75.1 54 68.5
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 1.5e-11 73.9 54 66.7
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.3e-11 72.8 111 40.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.3e-11 72.4 112 41.1
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.3e-11 72.4 57 61.4
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-10 70.9 110 41.8
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.6e-10 70.5 58 58.6
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.1e-10 70.1 94 47.9
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.8e-10 69.7 98 48.0
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 4.7e-10 68.9 58 56.9
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.1e-10 68.2 66 54.5
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 1.1e-09 67.8 75 48.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-09 67.8 75 48.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 9.9e-08 61.2 56 51.8
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 1.9e-06 57.0 37 67.6
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.4e-06 55.5 62 53.2


User provided reference genes

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