Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 8.3e-63 244.6 121 100.0
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-50 204.1 119 87.4
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 6.4e-47 191.8 138 76.1
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 3.1e-41 172.9 125 74.4
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 5.2e-41 172.2 120 74.2
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-39 166.4 114 78.1
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 8.4e-39 164.9 113 77.9
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 3.2e-38 162.9 111 78.4
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 9.3e-38 161.4 122 69.7
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-37 161.0 113 75.2
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-36 157.9 112 75.9
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 3.9e-36 156.0 98 80.6
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 8.7e-36 154.8 114 71.9
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 2.5e-35 153.3 120 68.3
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.3e-35 152.5 112 70.5
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 5.6e-35 152.1 109 72.5
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 9.6e-35 151.4 120 66.7
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.3e-34 151.0 99 73.7
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.3e-34 151.0 99 73.7
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.6e-34 150.6 113 69.9
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 1.6e-34 150.6 113 69.9
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.6e-34 150.6 123 64.2
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.1e-34 150.2 113 69.9
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 3.6e-34 149.4 112 70.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.8e-34 149.1 98 75.5
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 4.8e-34 149.1 98 76.5
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.1e-33 147.9 113 69.0
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.4e-33 147.5 113 69.9
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.4e-33 146.7 113 67.3
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 3.1e-33 146.4 112 69.6
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 3.1e-33 146.4 112 68.8
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 3.1e-33 146.4 113 69.0
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 4.0e-33 146.0 113 68.1
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 5.3e-33 145.6 118 68.6
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 5.3e-33 145.6 118 68.6
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 6.9e-33 145.2 109 69.7
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 6.9e-33 145.2 113 68.1
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 6.9e-33 145.2 113 67.3
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 9.0e-33 144.8 114 65.8
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 9.0e-33 144.8 120 65.0
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 1.5e-32 144.1 113 67.3
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-32 144.1 118 62.7
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 2.0e-32 143.7 113 66.4
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.0e-32 143.7 115 65.2
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.6e-32 143.3 111 68.5
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.4e-32 142.5 112 66.1
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 4.4e-32 142.5 113 65.5
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 7.6e-32 141.7 112 66.1
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 9.9e-32 141.4 113 64.6
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.3e-31 141.0 118 61.9
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.7e-31 140.6 113 68.1
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.7e-31 140.6 114 65.8
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 2.2e-31 140.2 113 66.4
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.2e-31 140.2 113 64.6
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 2.9e-31 139.8 113 64.6
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 2.9e-31 139.8 113 66.4
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 2.9e-31 139.8 111 65.8
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.9e-31 139.8 123 62.6
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 2.9e-31 139.8 98 70.4
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 2.9e-31 139.8 111 66.7
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.8e-31 139.4 112 65.2
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 3.8e-31 139.4 113 64.6
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 4.9e-31 139.0 111 66.7
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 6.4e-31 138.7 113 61.9
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 8.4e-31 138.3 98 73.5
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 1.1e-30 137.9 97 75.3
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.1e-30 137.9 113 65.5
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 1.1e-30 137.9 111 68.5
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 1.9e-30 137.1 113 62.8
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.9e-30 137.1 112 65.2
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 1.9e-30 137.1 111 64.0
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 1.9e-30 137.1 114 63.2
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 2.4e-30 136.7 111 66.7
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 4.2e-30 136.0 111 65.8
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.2e-29 134.4 111 62.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.2e-29 134.4 99 67.7
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 1.6e-29 134.0 118 60.2
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.1e-29 133.7 126 58.7
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 2.1e-29 133.7 132 58.3
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 3.5e-29 132.9 109 64.2
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 3.5e-29 132.9 112 67.0
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-29 132.9 112 67.0
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-29 132.9 112 67.0
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 3.5e-29 132.9 117 64.1
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 6.0e-29 132.1 113 65.5
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 6.0e-29 132.1 117 62.4
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.3e-28 131.0 99 66.7
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 3.0e-28 129.8 110 64.5
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 3.0e-28 129.8 98 68.4
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 3.9e-28 129.4 117 61.5
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 3.9e-28 129.4 115 61.7
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 3.9e-28 129.4 127 58.3
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 5.1e-28 129.0 112 61.6
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.7e-28 128.3 117 59.8
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 1.1e-27 127.9 99 68.7
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 1.1e-27 127.9 105 66.7
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.5e-27 127.5 110 62.7
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 4.3e-27 125.9 110 60.9
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 5.6e-27 125.6 111 62.2
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.3e-27 125.2 142 51.4
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 3.6e-26 122.9 110 60.0
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 6.2e-26 122.1 110 59.1
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 6.2e-26 122.1 110 59.1
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 6.2e-26 122.1 113 57.5
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.4e-25 120.9 98 62.2
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.4e-25 120.9 114 59.6
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 2.4e-25 120.2 110 58.2
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.4e-25 120.2 95 67.4
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 4.0e-25 119.4 120 60.0
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 4.0e-25 119.4 114 59.6
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 5.3e-25 119.0 110 57.3
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.3e-25 119.0 112 58.9
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 6.9e-25 118.6 120 60.0
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 6.9e-25 118.6 111 55.9
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.0e-24 117.1 110 57.3
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 2.0e-24 117.1 97 66.0
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.6e-24 116.7 67 82.1
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 3.4e-24 116.3 111 54.1
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 7.6e-24 115.2 95 66.3
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.3e-23 114.4 100 62.0
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-23 114.0 116 57.8
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 2.2e-23 113.6 118 56.8
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 4.9e-23 112.5 121 55.4
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.4e-23 112.1 130 50.8
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.1e-22 111.3 67 80.6
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 3.2e-22 109.8 117 52.1
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.6e-21 105.9 128 47.7
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-19 101.3 65 80.0
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.5e-19 100.9 70 74.3
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.5e-19 100.1 65 72.3
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 7.4e-19 98.6 70 72.9
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.4e-19 98.6 113 52.2
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 2.1e-18 97.1 97 51.5
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.8e-18 95.9 120 50.8
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 8.1e-18 95.1 118 50.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.1e-18 95.1 118 50.8
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 2.4e-17 93.6 117 52.1
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.0e-17 92.8 117 48.7
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.6e-16 90.1 118 47.5
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 3.4e-16 89.7 79 62.0
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.0e-15 88.2 118 46.6
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.5e-15 85.5 121 44.6
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 7.1e-14 82.0 66 65.2
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-13 81.3 49 77.6
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-13 81.3 120 42.5
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.2e-13 81.3 78 55.1
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 7.9e-13 78.6 49 73.5
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-12 77.8 113 46.0
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.9e-12 76.3 100 47.0
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 1.9e-11 73.9 125 37.6
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-11 73.9 115 47.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-11 73.9 125 37.6
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 2.5e-11 73.6 117 43.6
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.3e-11 73.2 62 58.1
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-09 67.8 113 40.7
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.4e-09 67.0 76 51.3
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 4.1e-09 66.2 58 60.3
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.0e-09 65.1 55 60.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-08 64.7 58 56.9
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 2.6e-08 63.5 37 89.2
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 2.5e-06 57.0 67 46.3
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.5e-06 57.0 85 41.2
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 3.2e-06 56.6 37 73.0
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.3e-06 55.1 63 50.8


User provided reference genes

Program Settings