Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 2.7e-70 269.2 216 100.0
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 7.3e-52 208.0 116 92.2
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 1.8e-50 203.4 110 92.7
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 4.9e-40 168.7 138 67.4
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 1.1e-39 167.5 136 76.5
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 4.6e-38 162.2 144 68.8
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 6.0e-38 161.8 136 72.1
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 6.0e-38 161.8 113 76.1
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 7.8e-38 161.4 136 70.6
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 7.8e-38 161.4 138 67.4
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 1.0e-37 161.0 136 75.0
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-37 161.0 138 73.2
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 1.0e-37 161.0 136 71.3
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 1.0e-37 161.0 136 72.8
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.3e-37 159.8 136 72.1
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 3.0e-37 159.5 136 71.3
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 3.0e-37 159.5 113 75.2
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 3.0e-37 159.5 136 69.1
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 3.9e-37 159.1 136 69.9
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 5.1e-37 158.7 136 69.1
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.1e-37 158.7 136 68.4
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 6.6e-37 158.3 137 71.5
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 6.6e-37 158.3 136 72.1
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 6.6e-37 158.3 136 72.1
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.1e-36 157.5 140 71.4
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 1.5e-36 157.1 136 70.6
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.5e-36 157.1 136 69.1
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 1.9e-36 156.8 136 71.3
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.9e-36 156.8 136 71.3
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.9e-36 156.8 136 74.3
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 2.5e-36 156.4 141 70.9
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 2.5e-36 156.4 141 70.9
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 2.5e-36 156.4 136 69.1
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 3.3e-36 156.0 136 70.6
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 4.3e-36 155.6 136 69.1
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 5.6e-36 155.2 136 69.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 7.3e-36 154.8 136 70.6
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 9.6e-36 154.5 136 69.9
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 9.6e-36 154.5 111 69.4
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.3e-35 154.1 137 71.5
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 2.8e-35 152.9 136 68.4
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.8e-35 152.9 136 69.9
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 2.8e-35 152.9 138 69.6
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.8e-35 152.9 136 61.0
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.8e-35 152.9 136 69.9
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 2.8e-35 152.9 135 69.6
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 3.6e-35 152.5 111 71.2
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 4.8e-35 152.1 136 69.9
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.1e-34 151.0 136 67.6
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 1.4e-34 150.6 111 66.7
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.4e-34 149.8 136 66.9
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 3.1e-34 149.4 136 66.9
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 4.0e-34 149.1 136 67.6
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 6.9e-34 148.3 136 67.6
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 6.9e-34 148.3 111 65.8
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 6.9e-34 148.3 136 66.9
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 9.0e-34 147.9 136 69.9
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 9.0e-34 147.9 136 69.1
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.2e-33 147.5 136 69.9
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-33 147.5 136 69.1
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-33 147.5 112 67.9
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 1.5e-33 147.1 136 66.2
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.0e-33 146.7 96 72.9
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 2.0e-33 146.7 96 72.9
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 3.4e-33 146.0 123 74.8
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 4.5e-33 145.6 142 66.9
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.5e-33 145.6 113 65.5
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 4.5e-33 145.6 137 68.6
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 4.5e-33 145.6 140 69.3
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 4.5e-33 145.6 111 65.8
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 4.5e-33 145.6 136 66.2
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 5.8e-33 145.2 136 64.7
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 7.6e-33 144.8 136 68.4
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.6e-33 144.8 136 68.4
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.6e-33 144.8 136 68.4
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.2e-32 143.3 136 68.4
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 2.2e-32 143.3 136 69.1
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 2.2e-32 143.3 155 61.9
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 4.9e-32 142.1 132 68.2
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 4.9e-32 142.1 136 66.2
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 6.4e-32 141.7 136 67.6
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 6.4e-32 141.7 111 64.9
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 8.4e-32 141.4 136 67.6
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 8.4e-32 141.4 136 66.2
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 8.4e-32 141.4 102 67.6
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.9e-31 140.2 136 61.8
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 1.9e-31 140.2 149 61.1
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 2.4e-31 139.8 136 68.4
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 7.1e-31 138.3 149 61.1
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 9.3e-31 137.9 136 65.4
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 1.6e-30 137.1 98 68.4
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 2.1e-30 136.7 138 63.8
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 2.7e-30 136.3 123 70.7
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 3.5e-30 136.0 136 62.5
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 3.5e-30 136.0 136 62.5
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 6.0e-30 135.2 136 62.5
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 1.0e-29 134.4 136 65.4
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.0e-29 134.4 141 62.4
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 1.0e-29 134.4 118 70.3
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.3e-29 134.0 136 61.8
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.3e-29 134.0 141 54.6
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 1.8e-29 133.7 136 64.0
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.8e-29 133.7 136 62.5
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.8e-29 133.7 121 70.2
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 2.3e-29 133.3 136 64.0
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 5.1e-29 132.1 136 61.0
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 6.7e-29 131.7 136 63.2
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 6.7e-29 131.7 118 68.6
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.5e-28 130.6 111 59.5
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 1.9e-28 130.2 136 60.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 3.3e-28 129.4 111 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 9.6e-28 127.9 110 59.1
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-27 127.1 145 51.0
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 2.8e-27 126.3 113 59.3
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.8e-27 125.6 110 60.0
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.4e-26 124.0 141 60.3
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 4.0e-26 122.5 93 64.5
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.9e-26 121.7 136 56.6
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.0e-25 120.2 111 60.4
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 5.8e-25 118.6 144 59.7
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.7e-24 117.1 145 58.6
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 7.1e-23 111.7 112 56.2
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 7.1e-23 111.7 111 54.1
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-22 110.5 116 51.7
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 3.5e-22 109.4 107 52.3
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 5.1e-21 105.5 65 76.9
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 8.7e-21 104.8 137 51.1
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.9e-20 103.6 65 78.5
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.8e-19 99.8 140 52.1
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-18 97.4 111 50.5
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 1.8e-18 97.1 136 55.1
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 5.3e-18 95.5 68 72.1
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.3e-18 95.5 124 46.8
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 2.6e-17 93.2 68 70.6
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.6e-17 93.2 136 42.6
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.6e-17 93.2 63 69.8
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.8e-17 92.0 63 74.6
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 4.9e-16 89.0 135 41.5
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 3.2e-15 86.3 77 61.0
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.1e-14 83.6 113 50.4
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-14 83.2 137 38.0
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 7.9e-14 81.6 135 37.8
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.3e-13 80.1 136 39.0
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.3e-13 80.1 83 54.2
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 8.7e-13 78.2 62 61.3
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 1.5e-12 77.4 54 70.4
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 9.6e-12 74.7 54 68.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.6e-12 74.7 135 37.8
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.1e-11 73.6 136 50.0
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 2.8e-11 73.2 54 66.7
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 8.2e-11 71.6 136 48.5
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.2e-11 71.6 119 52.1
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.1e-10 71.2 119 39.5
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 5.3e-10 68.9 58 58.6
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 9.0e-10 68.2 58 56.9
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 2.0e-09 67.0 75 48.0
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.0e-09 67.0 75 48.0
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.3e-08 64.3 66 53.0
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 2.9e-08 63.2 56 53.6


User provided reference genes

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