Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 2.6e-171 605.5 352 100.0
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 9.1e-52 208.4 116 92.2
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 3.6e-48 196.4 115 87.8
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 9.5e-41 171.8 125 74.4
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.7e-40 169.5 235 47.2
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-39 168.3 125 72.8
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.2e-38 164.9 130 66.9
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.5e-38 164.5 125 72.8
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 4.9e-37 159.5 228 45.2
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 1.8e-36 157.5 236 44.9
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-36 157.1 119 72.3
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 9.2e-36 155.2 114 71.9
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 2.0e-35 154.1 126 65.1
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 2.7e-35 153.7 116 68.1
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 2.7e-35 153.7 116 68.1
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 2.3e-34 150.6 112 71.4
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 2.3e-34 150.6 119 68.9
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 2.9e-34 150.2 115 67.0
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 3.8e-34 149.8 117 65.8
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 5.0e-34 149.4 115 64.3
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 5.0e-34 149.4 116 66.4
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 5.0e-34 149.4 120 70.0
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 6.6e-34 149.1 116 64.7
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 6.6e-34 149.1 116 66.4
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 8.6e-34 148.7 116 65.5
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.1e-33 148.3 118 65.3
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.1e-33 148.3 116 66.4
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.5e-33 147.9 116 69.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-33 147.9 121 65.3
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-33 147.9 116 65.5
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 1.9e-33 147.5 115 66.1
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 2.5e-33 147.1 116 65.5
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.3e-33 146.7 116 65.5
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 3.3e-33 146.7 117 65.8
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 4.3e-33 146.4 116 64.7
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 4.3e-33 146.4 116 68.1
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 5.6e-33 146.0 116 66.4
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 5.6e-33 146.0 116 64.7
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 5.6e-33 146.0 116 65.5
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 7.3e-33 145.6 120 65.0
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 1.2e-32 144.8 116 64.7
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-32 144.8 113 69.0
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 2.1e-32 144.1 116 64.7
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-32 144.1 115 63.5
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 2.1e-32 144.1 114 64.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 2.1e-32 144.1 117 65.8
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 3.6e-32 143.3 116 64.7
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 3.6e-32 143.3 115 64.3
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.7e-32 142.9 101 70.3
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 4.7e-32 142.9 101 70.3
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 6.1e-32 142.5 113 63.7
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 8.0e-32 142.1 116 63.8
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-31 141.4 118 63.6
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.4e-31 141.4 116 63.8
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.8e-31 141.0 116 62.1
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 1.8e-31 141.0 116 63.8
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 1.8e-31 141.0 114 64.0
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 2.3e-31 140.6 114 64.0
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 3.0e-31 140.2 116 64.7
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 3.0e-31 140.2 117 62.4
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.0e-31 140.2 116 61.2
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 6.8e-31 139.0 114 69.3
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 6.8e-31 139.0 103 67.0
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 8.9e-31 138.7 116 61.2
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 1.2e-30 138.3 116 60.3
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 1.5e-30 137.9 116 64.7
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.0e-30 137.5 107 65.4
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 2.0e-30 137.5 116 60.3
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 2.0e-30 137.5 115 60.0
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 2.6e-30 137.1 114 62.3
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 2.6e-30 137.1 115 62.6
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.6e-30 137.1 115 62.6
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.6e-30 137.1 115 62.6
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 2.6e-30 137.1 103 67.0
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 2.6e-30 137.1 120 60.0
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 3.4e-30 136.7 122 63.9
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 3.4e-30 136.7 101 67.3
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 5.7e-30 136.0 123 57.7
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 9.8e-30 135.2 114 64.0
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.3e-29 134.8 115 60.9
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 1.3e-29 134.8 114 60.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 2.9e-29 133.7 120 62.5
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 3.7e-29 133.3 103 66.0
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 6.4e-29 132.5 112 63.4
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 8.3e-29 132.1 116 61.2
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.1e-28 131.7 114 62.3
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 1.1e-28 131.7 114 58.8
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.1e-28 131.7 117 59.8
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.4e-28 131.3 115 58.3
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 1.8e-28 131.0 135 54.8
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 2.4e-28 130.6 112 60.7
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 2.4e-28 130.6 94 67.0
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 3.2e-28 130.2 95 71.6
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 3.2e-28 130.2 129 55.0
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 7.0e-28 129.0 116 56.9
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.6e-27 127.9 146 52.7
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-27 127.9 121 58.7
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 3.5e-27 126.7 92 68.5
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 3.5e-27 126.7 93 67.7
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 3.5e-27 126.7 116 58.6
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 4.6e-27 126.3 115 57.4
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 4.6e-27 126.3 115 57.4
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.6e-27 126.3 116 56.9
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 7.8e-27 125.6 112 61.6
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 7.8e-27 125.6 136 53.7
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 7.8e-27 125.6 115 58.3
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 1.7e-26 124.4 115 57.4
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.7e-26 124.4 115 56.5
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 3.0e-26 123.6 115 58.3
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 6.6e-26 122.5 115 59.1
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 6.6e-26 122.5 115 55.7
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 8.6e-26 122.1 116 56.9
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.6e-26 122.1 121 56.2
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 1.5e-25 121.3 115 59.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-25 121.3 115 58.3
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 2.5e-25 120.6 115 58.3
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 2.5e-25 120.6 115 54.8
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 3.3e-25 120.2 123 53.7
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 9.5e-25 118.6 124 54.0
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.8e-24 117.1 124 53.2
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 3.6e-24 116.7 116 58.6
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 3.1e-23 113.6 119 55.5
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.2e-22 111.7 112 56.2
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-22 111.7 117 52.1
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 6.4e-21 105.9 123 50.4
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 8.3e-21 105.5 112 50.9
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 5.4e-20 102.8 122 50.0
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 7.0e-20 102.4 70 72.9
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.0e-20 102.4 133 47.4
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-19 101.7 68 73.5
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 2.7e-19 100.5 70 74.3
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 6.0e-19 99.4 78 62.8
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.3e-18 97.4 124 46.8
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.9e-18 96.7 131 44.3
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 3.9e-18 96.7 120 47.5
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.1e-17 95.1 124 46.0
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.3e-17 93.2 68 70.6
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 7.3e-17 92.4 87 56.3
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 7.3e-17 92.4 116 48.3
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 3.6e-16 90.1 124 42.7
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 3.6e-16 90.1 118 45.8
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.8e-15 87.8 124 41.9
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.6e-14 84.0 127 41.7
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 3.4e-14 83.6 54 72.2
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 9.8e-14 82.0 54 70.4
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.2e-13 80.9 156 37.2
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 3.7e-13 80.1 54 68.5
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-12 78.2 101 50.5
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.9e-12 77.8 118 47.5
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 9.2e-12 75.5 67 58.2
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.6e-11 73.2 119 40.3
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.3e-10 70.9 58 60.3
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.3e-10 70.9 99 50.5
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 5.1e-10 69.7 115 40.9
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 7.3e-09 65.9 103 39.8
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 7.3e-09 65.9 103 39.8
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-08 65.1 63 54.0
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.6e-08 64.7 55 61.8
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.4e-07 61.6 61 49.2
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 2.6e-06 57.4 63 55.6


User provided reference genes

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