Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346471 Helianthus annuus HOM05D003018 ORTHO05D003402 3.4e-112 408.3 200 100.0
HanXRQChr11g0346131 Helianthus annuus HOM05D003018 ORTHO05D003402 1.8e-36 156.8 157 49.0
ECA248G0015 Erigeron canadensis HOM05D003018 ORTHO05D003402 2.1e-29 133.3 155 45.8
Dinv29191 Davidia involucrata HOM05D003018 ORTHO05D003402 9.5e-22 107.8 155 44.5
CSS0041512 Camellia sinensis var. sinensis HOM05D003018 ORTHO05D003402 1.2e-21 107.5 155 44.5
Actinidia08721 Actinidia chinensis HOM05D003018 ORTHO05D003402 1.6e-21 107.1 156 42.9
HanXRQChr10g0283991 Helianthus annuus HOM05D003018 ORTHO05D003402 1.6e-21 107.1 154 44.8
HanXRQChr16g0499771 Helianthus annuus HOM05D003018 ORTHO05D003402 2.8e-21 106.3 154 44.8
ATR0582G341 Amborella trichopoda HOM05D003018 ORTHO05D003402 3.6e-21 105.9 154 42.9
Dinv17276 Davidia involucrata HOM05D003018 ORTHO05D003402 3.6e-21 105.9 159 43.4
Nn2g15903 Nelumbo nucifera HOM05D003018 ORTHO05D003402 3.6e-21 105.9 154 42.2
MD01G1231500 Malus domestica HOM05D003018 ORTHO05D003402 4.7e-21 105.5 154 42.9
TAR374G1266 Trochodendron aralioides HOM05D003018 ORTHO05D003402 4.7e-21 105.5 154 42.9
Actinidia34288 Actinidia chinensis HOM05D003018 ORTHO05D003402 6.2e-21 105.1 158 41.8
Prupe.2G322200 Prunus persica HOM05D003018 ORTHO05D003402 6.2e-21 105.1 154 43.5
ECA232G4756 Erigeron canadensis HOM05D003018 ORTHO05D003402 8.1e-21 104.8 154 42.9
Gohir.D12G245300 Gossypium hirsutum HOM05D003018 ORTHO05D003402 8.1e-21 104.8 154 42.9
Gorai.008G262900 Gossypium raimondii HOM05D003018 ORTHO05D003402 8.1e-21 104.8 154 42.9
Lj3C891T18 Lonicera japonica HOM05D003018 ORTHO05D003402 8.1e-21 104.8 155 43.2
Duzib205G1477 Durio zibethinus HOM05D003018 ORTHO05D003402 1.1e-20 104.4 154 42.9
Gohir.A12G244400 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.1e-20 104.4 154 42.9
MD07G1303500 Malus domestica HOM05D003018 ORTHO05D003402 2.3e-20 103.2 153 42.5
PGR042G2079 Punica granatum HOM05D003018 ORTHO05D003402 3.1e-20 102.8 154 42.2
Rhsim03G0218500 Rhododendron simsii HOM05D003018 ORTHO05D003402 3.1e-20 102.8 154 40.9
PSO017G1017 Papaver somniferum HOM05D003018 ORTHO05D003402 4.0e-20 102.4 154 42.2
PSO478G2764 Papaver somniferum HOM05D003018 ORTHO05D003402 4.0e-20 102.4 154 42.2
Potri.012G004600 Populus trichocarpa HOM05D003018 ORTHO05D003402 4.0e-20 102.4 157 40.1
QL09p005993 Quercus lobata HOM05D003018 ORTHO05D003402 4.0e-20 102.4 162 40.7
Atru.chr12.2500 Acer truncatum HOM05D003018 ORTHO05D003402 5.2e-20 102.1 154 40.3
Atru.chr12.2524 Acer truncatum HOM05D003018 ORTHO05D003402 5.2e-20 102.1 154 40.3
Lsat_1_v5_gn_0_9661 Lactuca sativa HOM05D003018 ORTHO05D003402 6.8e-20 101.7 154 40.9
MBI07_g11061_MAGBIO Magnolia biondii HOM05D003018 ORTHO05D003402 6.8e-20 101.7 154 41.6
Nitab4.5_0007121g0040 Nicotiana tabacum HOM05D003018 ORTHO05D003402 6.8e-20 101.7 156 41.0
vmacro06475 Vaccinium macrocarpon HOM05D003018 ORTHO05D003402 6.8e-20 101.7 154 40.3
CANSAT21G0709 Cannabis sativa HOM05D003018 ORTHO05D003402 8.9e-20 101.3 155 41.3
ECA248G2250 Erigeron canadensis HOM05D003018 ORTHO05D003402 8.9e-20 101.3 178 36.0
Eucgr.K00480 Eucalyptus grandis HOM05D003018 ORTHO05D003402 8.9e-20 101.3 154 42.2
Manes.05G197500 Manihot esculenta HOM05D003018 ORTHO05D003402 8.9e-20 101.3 154 41.6
Duzib068G0518 Durio zibethinus HOM05D003018 ORTHO05D003402 1.2e-19 100.9 154 41.6
Oeu017358.1 Olea europaea HOM05D003018 ORTHO05D003402 1.2e-19 100.9 155 44.5
Thecc.03G212100 Theobroma cacao HOM05D003018 ORTHO05D003402 1.2e-19 100.9 154 40.3
Migut.F00122 Erythranthe guttata HOM05D003018 ORTHO05D003402 1.5e-19 100.5 156 41.0
MSTRG.26952 Avicennia marina HOM05D003018 ORTHO05D003402 2.6e-19 99.8 160 41.2
PGR142G0210 Punica granatum HOM05D003018 ORTHO05D003402 2.6e-19 99.8 154 41.6
SalBow4G0431 Salvia bowleyana HOM05D003018 ORTHO05D003402 2.6e-19 99.8 157 39.5
Solyc03g079940.3 Solanum lycopersicum HOM05D003018 ORTHO05D003402 2.6e-19 99.8 161 39.8
Sopen03g027480 Solanum pennellii HOM05D003018 ORTHO05D003402 2.6e-19 99.8 161 39.8
ECA248G1111 Erigeron canadensis HOM05D001208 ORTHO05D001593 3.4e-19 99.4 171 35.7
Duzib084G0455 Durio zibethinus HOM05D003018 ORTHO05D003402 4.4e-19 99.0 156 41.7
Glyma.04G225600 Glycine max HOM05D003018 ORTHO05D003402 4.4e-19 99.0 154 39.6
Glyma.06G139200 Glycine max HOM05D003018 ORTHO05D003402 4.4e-19 99.0 154 39.6
Sed0018717 Sechium edule HOM05D003018 ORTHO05D003402 4.4e-19 99.0 157 42.0
TPR.G35918 Trifolium pratense HOM05D003018 ORTHO05D003402 4.4e-19 99.0 152 40.1
Lsat_1_v5_gn_2_135421 Lactuca sativa HOM05D003018 ORTHO05D003402 5.8e-19 98.6 164 39.6
PGSC0003DMG400000572 Solanum tuberosum HOM05D003018 ORTHO05D003402 5.8e-19 98.6 161 39.8
CAN.G303.60 Capsicum annuum HOM05D003018 ORTHO05D003402 7.5e-19 98.2 161 40.4
CsaV3_5G000150 Cucumis sativus L. HOM05D003018 ORTHO05D003402 7.5e-19 98.2 154 41.6
Migut.F00968 Erythranthe guttata HOM05D003018 ORTHO05D003402 7.5e-19 98.2 163 38.0
Peaxi162Scf01026g00260 Petunia axillaris HOM05D003018 ORTHO05D003402 7.5e-19 98.2 156 40.4
Sed0009908 Sechium edule HOM05D003018 ORTHO05D003402 7.5e-19 98.2 162 42.0
TAR375G0624 Trochodendron aralioides HOM05D003018 ORTHO05D003402 7.5e-19 98.2 154 40.3
MELO3C005915.2 Cucumis melo HOM05D003018 ORTHO05D003402 9.9e-19 97.8 159 41.5
Lalb_Chr23g0272051 Lupinus albus HOM05D003018 ORTHO05D003402 9.9e-19 97.8 154 40.3
Nitab4.5_0000021g0210 Nicotiana tabacum HOM05D003018 ORTHO05D003402 9.9e-19 97.8 156 41.0
Lsat_1_v5_gn_8_4220 Lactuca sativa HOM05D003018 ORTHO05D003402 1.3e-18 97.4 178 38.2
Potri.015G000600 Populus trichocarpa HOM05D003018 ORTHO05D003402 1.3e-18 97.4 154 40.3
RcHm_v2.0_Chr1g0383311 Rosa chinensis HOM05D003018 ORTHO05D003402 2.9e-18 96.3 160 40.6
SGA_v2.0_scaffold165G38214 Striga asiatica HOM05D003018 ORTHO05D003402 2.9e-18 96.3 156 41.0
VMungo1309G0595 Vigna mungo HOM05D003018 ORTHO05D003402 2.9e-18 96.3 154 39.6
arahy.Tifrunner.gnm1.ann1.KA8TW6 Arachis hypogaea HOM05D003018 ORTHO05D003402 4.9e-18 95.5 155 38.1
arahy.Tifrunner.gnm1.ann1.SR3247 Arachis hypogaea HOM05D003018 ORTHO05D003402 4.9e-18 95.5 155 38.1
Eucgr.A00976 Eucalyptus grandis HOM05D003018 ORTHO05D003402 6.4e-18 95.1 154 40.9
Phvul.009G040400 Phaseolus vulgaris HOM05D003018 ORTHO05D003402 6.4e-18 95.1 154 39.6
Gorai.006G203900 Gossypium raimondii HOM05D003018 ORTHO05D003402 8.3e-18 94.7 155 40.0
TWI39G0588 Tripterygium wilfordii HOM05D003018 ORTHO05D003402 8.3e-18 94.7 154 40.3
CDE02G1646 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.1e-17 94.4 156 41.7
DCAR_010557 Daucus carota HOM05D003018 ORTHO05D003402 1.1e-17 94.4 81 59.3
Sabra15G0000400 Salix brachista HOM05D003018 ORTHO05D003402 1.1e-17 94.4 154 40.3
HPP92_007053 Vanilla planifolia HOM05D003018 ORTHO05D003402 1.1e-17 94.4 160 41.2
CDE02G1662 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 1.4e-17 94.0 162 41.4
Ciclev10021773m.g Citrus clementina HOM05D003018 ORTHO05D003402 1.4e-17 94.0 156 39.7
Gohir.D11G016900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.4e-17 94.0 154 39.0
Lalb_Chr11g0067561 Lupinus albus HOM05D003018 ORTHO05D003402 1.4e-17 94.0 154 39.6
Gohir.A11G017100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 1.9e-17 93.6 154 39.0
Aqoxy5G02912 Aquilegia oxysepala HOM05D003018 ORTHO05D003402 2.4e-17 93.2 151 40.4
Ca_16839_v3 Cicer arietinum L. HOM05D003018 ORTHO05D003402 2.4e-17 93.2 154 39.0
GSVIVG01038683001 Vitis vinifera HOM05D003018 ORTHO05D003402 2.4e-17 93.2 81 56.8
CDE06G0409 Ceratophyllum demersum HOM05D003018 ORTHO05D003402 4.1e-17 92.4 156 39.7
FvH4_7g33330 Fragaria vesca HOM05D003018 ORTHO05D003402 5.4e-17 92.0 152 38.2
FAN01G2324 Fragaria x ananassa HOM05D003018 ORTHO05D003402 7.1e-17 91.7 152 38.2
Gorai.007G017700 Gossypium raimondii HOM05D003018 ORTHO05D003402 9.2e-17 91.3 151 39.1
Ah.13g071050 Amaranthus hybridus HOM05D003018 ORTHO05D003402 1.2e-16 90.9 161 35.4
CiPaw.06G038200 Carya illinoinensis HOM05D003018 ORTHO05D003402 2.1e-16 90.1 159 38.4
FAN03G3459 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.7e-16 89.7 154 37.7
FAN10G3922 Fragaria x ananassa HOM05D003018 ORTHO05D003402 2.7e-16 89.7 154 37.7
Lsat_1_v5_gn_2_3400 Lactuca sativa HOM05D003018 ORTHO05D003402 4.6e-16 89.0 194 36.6
FAN10G1538 Fragaria x ananassa HOM05D003018 ORTHO05D003402 6.0e-16 88.6 154 37.0
Lj1g0024936 Lotus japonicus HOM05D003018 ORTHO05D003402 6.0e-16 88.6 154 37.7
EL10Ac3g05130 Beta vulgaris HOM05D003018 ORTHO05D003402 1.0e-15 87.8 81 53.1
AUR62005947 Chenopodium quinoa HOM05D003018 ORTHO05D003402 1.0e-15 87.8 155 38.1
AUR62028118 Chenopodium quinoa HOM05D003018 ORTHO05D003402 1.0e-15 87.8 155 38.1
Cc02_g00590 Coffea canephora HOM05D003018 ORTHO05D003402 1.0e-15 87.8 81 55.6
COL.COLO4_14400 Corchorus olitorius HOM05D003018 ORTHO05D003402 1.3e-15 87.4 178 37.1
Sc19g0000360 Simmondsia chinensis HOM05D003018 ORTHO05D003402 1.7e-15 87.0 81 54.3
Gohir.A09G187100 Gossypium hirsutum HOM05D003018 ORTHO05D003402 3.9e-15 85.9 77 55.8
Medtr3g093380 Medicago truncatula HOM05D003018 ORTHO05D003402 8.6e-15 84.7 81 50.6
Zm00001eb242440 Zea mays HOM05D003018 ORTHO05D003402 1.1e-14 84.3 81 49.4
Os04g0405100 Oryza sativa ssp. japonica HOM05D003018 ORTHO05D003402 1.9e-14 83.6 151 36.4
Zm00001eb181270 Zea mays HOM05D003018 ORTHO05D003402 3.3e-14 82.8 84 46.4
Haze_00335 Corylus avellana HOM05D003018 ORTHO05D003402 4.3e-14 82.4 178 35.4
Pp3c25_7060 Physcomitrium patens HOM05D003018 ORTHO05D003402 7.3e-14 81.6 82 52.4
Psat5g071120 Pisum sativum HOM05D003018 ORTHO05D003402 1.6e-13 80.5 82 48.8
THA.LOC104798993 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 1.6e-13 80.5 152 38.2
Carub.0006s2250 Capsella rubella HOM05D003018 ORTHO05D003402 2.1e-13 80.1 152 39.5
Mapoly0083s0018 Marchantia polymorpha HOM05D003018 ORTHO05D003402 2.1e-13 80.1 80 52.5
AL6G36250 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 2.8e-13 79.7 152 39.5
Sp2g22740 Schrenkiella parvula HOM05D003018 ORTHO05D003402 2.8e-13 79.7 152 38.8
CiPaw.05G208700 Carya illinoinensis HOM05D003018 ORTHO05D003402 3.6e-13 79.3 83 49.4
AT5G24650 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 4.7e-13 79.0 152 38.8
BcaNung01249 Brassica carinata HOM05D003018 ORTHO05D003402 4.7e-13 79.0 151 39.1
Aa31LG4G18050 Aethionema arabicum HOM05D003018 ORTHO05D003402 6.2e-13 78.6 151 36.4
Zm00001eb084410 Zea mays HOM05D003018 ORTHO05D003402 6.2e-13 78.6 81 48.1
A06p35470 Brassica napus HOM05D003018 ORTHO05D003402 8.1e-13 78.2 168 36.3
BraA06t26470Z Brassica rapa HOM05D003018 ORTHO05D003402 8.1e-13 78.2 168 36.3
AagrBONN_evm.TU.Sc2ySwM_344.126 Anthoceros agrestis HOM05D003018 ORTHO05D003402 1.1e-12 77.8 79 50.6
BcaNung02005 Brassica carinata HOM05D003018 ORTHO05D003402 1.1e-12 77.8 152 38.2
C07p43070 Brassica napus HOM05D003018 ORTHO05D003402 1.1e-12 77.8 152 38.2
BolC7t44834H Brassica oleracea HOM05D003018 ORTHO05D003402 1.1e-12 77.8 152 38.2
Thhalv10004788m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 1.4e-12 77.4 152 38.2
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 1.8e-12 77.0 150 35.3
CARHR188810 Cardamine hirsuta HOM05D003018 ORTHO05D003402 2.4e-12 76.6 152 38.2
THA.LOC104814958 Tarenaya hassleriana HOM05D003018 ORTHO05D003402 2.4e-12 76.6 152 36.8
CARHR158570 Cardamine hirsuta HOM05D003018 ORTHO05D003402 5.2e-12 75.5 151 35.1
PSO675G3559 Papaver somniferum HOM05D003018 ORTHO05D003402 5.2e-12 75.5 82 50.0
Aa31LG11G3900 Aethionema arabicum HOM05D003018 ORTHO05D003402 6.8e-12 75.1 151 35.8
Thhalv10010930m.g Eutrema salsugineum HOM05D003018 ORTHO05D003402 6.8e-12 75.1 155 38.7
unitig_62.g23859 Utricularia gibba HOM05D003018 ORTHO05D003402 6.8e-12 75.1 70 52.9
unitig_64.g29776 Utricularia gibba HOM05D000525 ORTHO05D001368 6.8e-12 75.1 70 52.9
BcaB01g00697 Brassica carinata HOM05D003018 ORTHO05D003402 2.0e-11 73.6 156 37.8
HanXRQChr15g0497021 Helianthus annuus HOM05D003018 ORTHO05D003402 2.0e-11 73.6 146 38.4
SMO356G0102 Selaginella moellendorffii HOM05D003018 ORTHO05D003402 3.4e-11 72.8 158 34.8
ECA232G1833 Erigeron canadensis HOM05D000455 ORTHO05D000434 7.6e-11 71.6 68 48.5
Sp5g12550 Schrenkiella parvula HOM05D003018 ORTHO05D003402 7.6e-11 71.6 151 35.8
BcaC07g39417 Brassica carinata HOM05D003018 ORTHO05D003402 9.9e-11 71.2 154 38.3
C08p24540 Brassica napus HOM05D003018 ORTHO05D003402 9.9e-11 71.2 154 38.3
BolC8t50072H Brassica oleracea HOM05D003018 ORTHO05D003402 9.9e-11 71.2 154 38.3
PSO724G0429 Papaver somniferum HOM05D003018 ORTHO05D003402 1.3e-10 70.9 156 33.3
HanXRQChr01g0012351 Helianthus annuus HOM05D003018 ORTHO05D003402 1.7e-10 70.5 73 49.3
AL5G29400 Arabidopsis lyrata HOM05D003018 ORTHO05D003402 2.2e-10 70.1 167 31.7
AT3G49560 Arabidopsis thaliana HOM05D003018 ORTHO05D003402 3.8e-10 69.3 151 33.1
A06p18200 Brassica napus HOM05D003018 ORTHO05D003402 4.9e-10 68.9 153 37.9
BraA06t24904Z Brassica rapa HOM05D003018 ORTHO05D003402 4.9e-10 68.9 153 37.9
Carub.0005s1589 Capsella rubella HOM05D003018 ORTHO05D003402 4.9e-10 68.9 151 33.1
PSO729G0279 Papaver somniferum HOM05D003018 ORTHO05D003402 4.9e-10 68.9 81 48.1
PSO782G4498 Papaver somniferum HOM05D003018 ORTHO05D003402 1.9e-09 67.0 77 49.4
PSO017G0083 Papaver somniferum HOM05D003018 ORTHO05D003402 2.4e-09 66.6 81 48.1
PSO170G6331 Papaver somniferum HOM05D003018 ORTHO05D003402 3.2e-09 66.2 76 50.0
PSO210G3039 Papaver somniferum HOM05D003018 ORTHO05D003402 3.2e-09 66.2 76 50.0
PSO339G1784 Papaver somniferum HOM05D003018 ORTHO05D003402 3.5e-08 62.8 154 29.9
ClCG01G000020 Citrullus lanatus HOM05D003018 ORTHO05D003402 6.0e-08 62.0 138 34.8
Cre03.g183100 Chlamydomonas reinhardtii HOM05D003018 ORTHO05D003402 3.9e-07 59.3 87 39.1
Gohir.D09G181900 Gossypium hirsutum HOM05D003018 ORTHO05D003402 6.6e-07 58.5 107 36.4
PRCOL_00000888 Prasinoderma coloniale HOM05D003018 ORTHO05D003402 6.6e-07 58.5 81 39.5
Lalb_Chr08g0239411 Lupinus albus HOM05D003018 ORTHO05D003402 8.7e-07 58.2 109 35.8
PSO832G1145 Papaver somniferum HOM05D003018 ORTHO05D003402 1.5e-06 57.4 76 42.1
PSO339G5652 Papaver somniferum HOM05D003018 ORTHO05D003402 2.5e-06 56.6 117 33.3
PSO339G6351 Papaver somniferum HOM05D003018 ORTHO05D003402 4.3e-06 55.8 151 29.8
Cpa.g.sc3.187 Carica papaya HOM05D003018 ORTHO05D003402 5.6e-06 55.5 107 35.5
Psat1g196200 Pisum sativum HOM05D003018 ORTHO05D003402 9.6e-06 54.7 120 35.8
Psat6g092160 Pisum sativum HOM05D003018 ORTHO05D003402 9.6e-06 54.7 120 35.8


User provided reference genes

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