Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 5.0e-105 384.4 191 100.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 9.0e-46 187.6 91 96.7
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 1.5e-45 186.8 90 96.7
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.9e-44 182.6 89 94.4
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.6e-42 176.8 108 81.5
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-42 175.6 91 93.4
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-42 175.6 91 93.4
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.6e-42 175.6 91 93.4
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.6e-42 175.6 91 93.4
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 4.6e-42 175.3 91 93.4
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 7.9e-42 174.5 91 92.3
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.0e-41 174.1 91 92.3
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.0e-41 174.1 91 92.3
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.0e-41 174.1 91 92.3
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.0e-41 174.1 91 92.3
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.0e-41 174.1 91 92.3
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.3e-41 173.7 91 92.3
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.3e-41 173.7 91 92.3
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.8e-41 173.3 91 92.3
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 1.8e-41 173.3 91 91.2
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.8e-41 173.3 91 91.2
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.8e-41 173.3 91 92.3
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.8e-41 173.3 91 92.3
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 2.3e-41 172.9 91 91.2
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 2.3e-41 172.9 91 91.2
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.3e-41 172.9 91 91.2
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.3e-41 172.9 90 91.1
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.3e-41 172.9 91 93.4
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 3.0e-41 172.6 91 91.2
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 3.0e-41 172.6 91 91.2
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-41 172.6 91 91.2
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.0e-41 172.6 91 91.2
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.0e-41 172.6 91 91.2
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.9e-41 172.2 82 97.6
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.1e-41 171.8 82 96.3
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 5.1e-41 171.8 91 91.2
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 5.1e-41 171.8 91 92.3
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 6.7e-41 171.4 91 90.1
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 6.7e-41 171.4 91 90.1
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 6.7e-41 171.4 91 91.2
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 6.7e-41 171.4 91 91.2
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 6.7e-41 171.4 91 91.2
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.7e-41 171.4 91 90.1
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 8.7e-41 171.0 82 96.3
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.7e-41 171.0 82 96.3
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 8.7e-41 171.0 82 96.3
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 8.7e-41 171.0 82 96.3
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 8.7e-41 171.0 91 90.1
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.5e-40 170.2 91 90.1
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.5e-40 170.2 91 90.1
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.5e-40 170.2 90 90.0
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 1.9e-40 169.9 91 89.0
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.9e-40 169.9 91 89.0
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 1.9e-40 169.9 91 90.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 2.5e-40 169.5 91 89.0
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 2.5e-40 169.5 82 95.1
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 3.3e-40 169.1 82 96.3
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.3e-40 169.1 91 89.0
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 3.3e-40 169.1 91 89.0
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 3.3e-40 169.1 87 92.0
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 3.3e-40 169.1 83 94.0
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.3e-40 168.7 82 95.1
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.3e-40 168.7 82 95.1
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 4.3e-40 168.7 91 90.1
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 4.3e-40 168.7 82 95.1
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 5.7e-40 168.3 81 95.1
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.7e-40 168.3 81 95.1
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.7e-40 168.3 81 95.1
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 5.7e-40 168.3 81 95.1
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 5.7e-40 168.3 81 95.1
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 7.4e-40 167.9 82 95.1
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 7.4e-40 167.9 91 89.0
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 9.7e-40 167.5 82 93.9
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 1.3e-39 167.2 81 95.1
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.3e-39 167.2 108 78.7
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 1.3e-39 167.2 82 93.9
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.3e-39 167.2 91 89.0
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.3e-39 167.2 91 89.0
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 1.6e-39 166.8 90 86.7
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.6e-39 166.8 89 89.9
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.6e-39 166.8 82 95.1
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.6e-39 166.8 83 92.8
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.6e-39 166.8 91 89.0
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 2.2e-39 166.4 81 95.1
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.2e-39 166.4 91 87.9
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.2e-39 166.4 81 93.8
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.2e-39 166.4 90 86.7
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.2e-39 166.4 91 89.0
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.2e-39 166.4 82 93.9
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.2e-39 166.4 91 90.1
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 2.8e-39 166.0 91 87.9
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 2.8e-39 166.0 83 92.8
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 4.8e-39 165.2 91 86.8
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 6.3e-39 164.9 81 93.8
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 6.3e-39 164.9 91 87.9
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 6.3e-39 164.9 91 87.9
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 6.3e-39 164.9 89 88.8
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 6.3e-39 164.9 90 83.3
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 8.2e-39 164.5 92 89.1
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 8.2e-39 164.5 91 86.8
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 8.2e-39 164.5 83 90.4
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 8.2e-39 164.5 82 93.9
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.1e-38 164.1 91 86.8
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.1e-38 164.1 91 84.6
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 1.1e-38 164.1 82 91.5
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.1e-38 164.1 82 91.5
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.1e-38 164.1 91 86.8
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.4e-38 163.7 79 94.9
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.4e-38 163.7 91 86.8
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 1.8e-38 163.3 91 85.7
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 2.4e-38 162.9 81 92.6
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.1e-38 162.5 82 93.9
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.1e-38 162.5 82 93.9
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.1e-38 162.5 92 87.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 4.1e-38 162.2 77 96.1
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 4.1e-38 162.2 82 92.7
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 5.3e-38 161.8 87 88.5
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 6.9e-38 161.4 82 91.5
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.0e-37 159.8 82 87.8
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 2.0e-37 159.8 92 85.9
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 2.6e-37 159.5 83 91.6
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 3.4e-37 159.1 82 86.6
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 4.5e-37 158.7 91 84.6
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 4.5e-37 158.7 80 91.2
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 4.5e-37 158.7 82 90.2
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 4.5e-37 158.7 91 82.4
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 5.9e-37 158.3 99 80.8
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 7.7e-37 157.9 97 76.3
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.0e-36 157.5 98 79.6
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.0e-36 157.5 78 93.6
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.3e-36 157.1 80 92.5
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.7e-36 156.8 78 89.7
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 3.8e-36 155.6 84 83.3
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 5.0e-36 155.2 83 85.5
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 8.5e-36 154.5 75 94.7
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 8.5e-36 154.5 75 94.7
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.4e-35 153.7 75 90.7
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.4e-35 153.7 85 83.5
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.4e-35 153.7 85 83.5
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 3.2e-35 152.5 74 91.9
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 2.7e-34 149.4 83 86.7
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 4.6e-34 148.7 74 89.2
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 4.6e-34 148.7 74 89.2
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 4.6e-34 148.7 74 89.2
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 4.6e-34 148.7 74 89.2
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 4.6e-34 148.7 86 77.9
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.0e-33 147.5 82 80.5
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 1.0e-33 147.5 77 88.3
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 6.3e-31 138.3 73 83.6
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 6.3e-31 138.3 78 78.2
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 3.1e-30 136.0 83 81.9
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.5e-29 133.7 91 70.3
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 3.4e-29 132.5 68 83.8
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.9e-28 129.4 64 90.6
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.1e-27 127.5 74 83.8
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.1e-27 127.5 69 78.3
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 7.9e-26 121.3 60 91.7
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.1e-24 117.5 60 85.0
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.1e-24 117.5 63 84.1
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 6.5e-20 101.7 55 87.3
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.5e-19 100.5 48 95.8
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 2.5e-19 99.8 77 59.7
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 2.6e-16 89.7 68 67.6
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 4.4e-16 89.0 54 79.6
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.7e-15 87.0 44 88.6
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 1.2e-13 80.9 46 78.3
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.5e-13 79.0 38 89.5
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 5.9e-13 78.6 39 84.6
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 5.9e-13 78.6 39 84.6
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.9e-13 78.6 37 97.3
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 5.9e-13 78.6 78 52.6
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 7.7e-13 78.2 47 80.9
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.7e-12 77.0 53 71.7
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.0e-12 75.5 67 59.7
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.5e-12 75.1 59 64.4
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.6e-10 70.5 38 89.5
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.0e-09 67.8 38 84.2
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.0e-09 66.2 51 58.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 7.5e-08 61.6 29 86.2
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.3e-07 60.8 39 79.5
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 9.1e-06 54.7 29 82.8


User provided reference genes

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