Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1260.0 633 100.0
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 635 91.5
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 633 88.3
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1100.5 633 85.8
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1098.2 633 85.5
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1096.6 628 85.8
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 628 85.4
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1093.2 628 85.7
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1091.6 628 85.7
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1091.3 633 85.2
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1091.3 628 85.4
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 628 85.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1090.5 628 85.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1089.7 628 85.7
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1087.8 628 85.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1086.6 628 85.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1086.2 628 85.4
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1085.9 628 84.9
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1085.5 628 85.2
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 628 85.2
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 631 84.9
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1083.9 628 84.7
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1083.9 627 84.8
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1083.6 628 85.0
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 628 84.9
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 628 84.7
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1082.0 631 84.8
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1080.5 628 84.7
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1080.5 628 84.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1080.1 628 84.4
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1080.1 628 83.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1079.7 628 84.1
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1079.7 628 84.4
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1078.9 622 85.5
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 628 84.2
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 628 84.6
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 626 84.5
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 628 84.4
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 628 84.4
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1076.6 628 84.1
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1076.2 628 84.6
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 622 84.7
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 628 84.1
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 4.3e-312 1074.7 632 83.7
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 4.3e-312 1074.7 628 83.6
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 4.3e-312 1074.7 628 83.9
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 4.3e-312 1074.3 622 84.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 4.3e-312 1074.3 628 84.4
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 8.7e-312 1073.2 628 84.2
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 8.7e-312 1072.8 628 84.1
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 1.3e-311 1072.4 628 84.1
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 1.3e-311 1072.4 628 84.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.3e-311 1072.4 628 84.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 1.3e-311 1072.4 628 83.3
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 3.0e-311 1071.2 628 84.2
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 3.0e-311 1071.2 638 83.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 3.0e-311 1071.2 628 83.6
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 6.5e-311 1070.1 628 83.6
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 8.7e-311 1069.7 628 84.1
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 8.7e-311 1069.7 628 83.9
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 1.5e-310 1068.9 628 83.6
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 2.5e-310 1068.1 628 83.0
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 5.6e-310 1067.0 628 83.1
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 1.6e-309 1065.4 627 82.8
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 2.1e-309 1065.1 623 84.1
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 4.7e-309 1063.9 628 82.6
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 8.1e-309 1063.1 628 82.5
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 2.3e-308 1061.6 628 82.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 4.0e-308 1060.8 628 82.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 4.0e-308 1060.8 628 83.1
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 5.2e-308 1060.4 628 83.0
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 8.9e-308 1059.7 628 82.6
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 4.4e-307 1057.4 628 83.4
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.8e-307 1057.0 628 82.8
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 7.6e-307 1056.6 628 81.7
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 7.6e-307 1056.6 628 82.5
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 9.9e-307 1056.2 628 82.2
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 1.3e-306 1055.8 628 82.0
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 1.7e-306 1055.4 628 82.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.9e-306 1054.7 655 80.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 2.9e-306 1054.7 628 81.8
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 4.9e-306 1053.9 628 81.7
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 1.1e-305 1052.7 628 81.8
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 2.4e-305 1051.6 628 81.8
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 2.4e-305 1051.6 628 81.8
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 2.4e-305 1051.6 628 81.8
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 2.4e-305 1051.6 628 82.8
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 4.1e-305 1050.8 628 81.7
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 7.8e-304 1046.6 628 81.8
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 1.7e-303 1045.4 628 81.2
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 3.0e-303 1044.6 633 80.6
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 3.9e-303 1044.3 628 82.6
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 6.6e-303 1043.5 628 81.7
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 1.1e-302 1042.7 628 81.7
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 2.5e-302 1041.6 633 80.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 5.6e-302 1040.4 628 82.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 7.3e-302 1040.0 623 82.5
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 6.2e-301 1036.9 628 81.1
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 4.0e-300 1034.2 628 81.4
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 6.6e-295 1016.9 628 79.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 2.2e-290 1001.9 582 84.5
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 2.4e-289 998.4 638 78.4
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 2.5e-286 988.4 632 76.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.5e-283 979.2 626 76.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.5e-267 926.0 534 84.6
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.9e-266 921.8 534 84.6
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.1e-260 903.3 532 83.5
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 9.0e-260 900.2 639 71.2
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 3.6e-256 888.3 629 71.4
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.3e-250 869.8 628 71.3
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 3.9e-247 858.2 649 68.0
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 4.4e-246 854.7 490 86.3
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.5e-230 803.1 503 79.9
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 8.3e-229 797.3 503 78.7
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 5.9e-227 791.2 631 64.5
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 8.5e-226 787.3 628 67.2
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 8.0e-224 780.8 640 61.4
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 3.1e-220 768.8 628 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.0e-218 763.8 492 78.0
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.1e-191 674.1 444 75.9
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.4e-180 637.1 535 64.5
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.3e-178 629.8 638 52.5
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.7e-165 587.0 354 81.1
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.8e-165 585.9 446 67.7
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.7e-152 542.7 402 71.1
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 3.7e-144 516.2 306 83.3
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 3.9e-138 496.1 287 85.4
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.9e-125 453.4 269 83.3
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.2e-115 421.4 517 44.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 7.0e-87 325.9 192 83.3
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 7.8e-78 295.8 231 64.9
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.0e-77 295.4 178 83.7
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.1e-75 287.7 231 64.9
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 4.9e-72 276.6 160 84.4
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.5e-70 270.4 163 82.8
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.8e-64 250.4 628 31.5
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.2e-55 220.7 273 47.6
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 5.1e-45 186.8 229 49.3
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.1e-38 164.9 96 84.4
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 8.7e-37 159.5 96 81.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 2.5e-36 157.9 103 71.8
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 9.7e-36 156.0 99 77.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.7e-35 154.1 86 82.6
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 4.8e-35 153.7 152 57.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 5.9e-33 146.7 90 82.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 6.5e-32 143.3 91 76.9
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.1e-31 142.5 91 75.8
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 6.1e-30 136.7 74 83.8
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 2.5e-28 131.3 142 52.1
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 3.3e-20 104.4 80 66.2
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 4.8e-19 100.5 53 88.7
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 3.1e-18 97.8 116 50.0
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.4e-15 89.0 63 66.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.4e-15 89.0 51 80.4
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 3.6e-14 84.3 49 79.6
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.1e-12 79.3 65 61.5
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 7.4e-12 76.6 56 62.5
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.6e-09 68.9 43 74.4


User provided reference genes

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