Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0344511 Helianthus annuus HOM05D003684 ORTHO05D004428 4.2e-21 104.0 61 100.0
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 5.1e-19 97.1 60 93.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 8.2e-17 89.7 62 91.9
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 9.4e-13 76.3 60 80.0
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 5.3e-08 60.5 33 75.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.5e-07 58.9 33 75.8
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.5e-07 58.9 33 75.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 2.0e-07 58.5 33 72.7
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.0e-07 58.5 53 54.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 2.6e-07 58.2 33 72.7
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 2.6e-07 58.2 33 69.7
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 3.4e-07 57.8 33 72.7
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 3.4e-07 57.8 33 72.7
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 3.4e-07 57.8 33 72.7
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 3.4e-07 57.8 33 72.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 3.4e-07 57.8 33 72.7
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 3.4e-07 57.8 32 71.9
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 4.5e-07 57.4 33 75.8
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 7.7e-07 56.6 33 72.7
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 7.7e-07 56.6 59 52.5
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 7.7e-07 56.6 33 69.7
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 7.7e-07 56.6 57 50.9
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.0e-06 56.2 59 52.5
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.0e-06 56.2 33 69.7
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 1.0e-06 56.2 33 69.7
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 1.0e-06 56.2 33 69.7
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.0e-06 56.2 57 50.9
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.0e-06 56.2 59 52.5
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.0e-06 56.2 33 72.7
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-06 56.2 55 47.3
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.0e-06 56.2 55 47.3
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 1.0e-06 56.2 33 72.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.0e-06 56.2 33 72.7
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.3e-06 55.8 59 52.5
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.3e-06 55.8 33 72.7
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 1.3e-06 55.8 33 72.7
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 1.3e-06 55.8 33 63.6
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-06 55.5 33 66.7
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.7e-06 55.5 33 66.7
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 1.7e-06 55.5 33 69.7
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 1.7e-06 55.5 33 69.7
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 1.7e-06 55.5 33 69.7
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 2.2e-06 55.1 32 75.0
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 2.2e-06 55.1 33 63.6
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 69.7
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 66.7
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 69.7
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 69.7
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 69.7
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 69.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 2.9e-06 54.7 33 69.7
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.8e-06 54.3 33 66.7
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.8e-06 54.3 53 50.9
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 3.8e-06 54.3 33 69.7
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 3.8e-06 54.3 33 69.7
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.8e-06 54.3 33 66.7
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.8e-06 54.3 33 66.7
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-06 54.3 33 66.7
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 5.0e-06 53.9 33 63.6
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 5.0e-06 53.9 55 45.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.0e-06 53.9 55 45.5
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 5.0e-06 53.9 55 45.5
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 5.0e-06 53.9 53 52.8
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 5.0e-06 53.9 33 69.7
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 5.0e-06 53.9 33 66.7
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.0e-06 53.9 33 63.6
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 5.0e-06 53.9 60 43.3
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 6.5e-06 53.5 33 66.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 6.5e-06 53.5 55 45.5
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 6.5e-06 53.5 55 49.1
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 6.5e-06 53.5 32 68.8
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 6.5e-06 53.5 32 68.8
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 8.5e-06 53.1 33 66.7
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 8.5e-06 53.1 33 66.7
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 8.5e-06 53.1 33 66.7
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 8.5e-06 53.1 33 66.7
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 8.5e-06 53.1 57 43.9
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 8.5e-06 53.1 32 71.9
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 8.5e-06 53.1 33 63.6
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 8.5e-06 53.1 54 48.1
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 8.5e-06 53.1 57 45.6
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 8.5e-06 53.1 33 66.7


User provided reference genes

Program Settings