Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 3.5e-149 531.6 265 100.0
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 2.0e-123 446.0 278 80.9
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 8.2e-122 440.7 276 81.2
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 1.2e-107 393.7 258 77.1
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.2e-104 383.6 271 73.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 2.9e-103 379.0 282 69.9
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 3.8e-103 378.6 284 69.4
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 5.5e-102 374.8 288 66.7
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 5.5e-102 374.8 260 73.8
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 5.5e-102 374.8 244 76.6
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.2e-101 373.6 298 64.4
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 1.6e-101 373.2 295 67.1
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 2.1e-101 372.9 268 72.4
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.7e-101 372.5 279 68.8
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.6e-101 372.1 279 68.8
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.8e-100 369.8 276 69.2
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.8e-100 369.8 291 66.7
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 2.3e-100 369.4 244 75.4
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 3.0e-100 369.0 272 68.8
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 5.2e-100 368.2 254 72.8
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 1.2e-99 367.1 245 74.7
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 2.0e-99 366.3 254 72.4
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 4.4e-99 365.2 252 72.2
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.3e-98 363.6 273 67.0
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 3.7e-98 362.1 273 68.1
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 4.8e-98 361.7 266 70.7
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 6.3e-98 361.3 254 72.0
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 8.3e-98 360.9 258 70.5
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.1e-97 360.5 272 68.0
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 7.0e-97 357.8 263 68.8
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 9.1e-97 357.5 297 63.6
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.0e-96 356.3 287 63.1
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 2.7e-96 355.9 282 66.0
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 3.5e-96 355.5 293 63.8
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 3.5e-96 355.5 269 66.9
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 5.9e-96 354.8 283 65.4
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 5.9e-96 354.8 293 65.9
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.0e-95 354.0 271 67.2
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 2.9e-95 352.4 286 65.7
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 5.0e-95 351.7 270 67.0
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 5.0e-95 351.7 246 73.2
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 5.0e-95 351.7 248 71.0
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.1e-94 350.5 270 67.8
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 3.3e-94 349.0 237 74.7
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.2e-94 348.6 282 65.2
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 5.5e-94 348.2 270 67.4
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 5.5e-94 348.2 282 65.2
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.2e-93 347.1 265 66.4
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 2.1e-93 346.3 237 74.3
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 2.1e-93 346.3 282 64.9
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 2.8e-93 345.9 267 66.7
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 2.8e-93 345.9 257 70.0
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.8e-93 345.9 239 73.6
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 3.6e-93 345.5 289 63.3
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 3.6e-93 345.5 259 68.3
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 3.6e-93 345.5 279 66.3
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 4.7e-93 345.1 265 66.8
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 1.0e-92 344.0 266 65.4
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 1.0e-92 344.0 246 71.5
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-92 343.6 265 65.7
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 1.8e-92 343.2 270 65.2
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 5.2e-92 341.7 265 66.0
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 1.2e-91 340.5 269 63.9
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 1.2e-91 340.5 268 64.2
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 2.0e-91 339.7 268 65.7
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 2.6e-91 339.3 265 65.3
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 2.6e-91 339.3 271 64.6
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 1.3e-90 337.0 256 66.0
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.7e-90 336.7 265 64.5
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 3.7e-90 335.5 270 63.3
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 6.3e-90 334.7 265 64.2
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 1.8e-89 333.2 263 63.9
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 1.8e-89 333.2 279 62.4
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 7.0e-89 331.3 257 68.9
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 9.2e-89 330.9 274 65.0
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 3.9e-87 325.5 260 65.0
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 8.6e-87 324.3 273 63.4
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.1e-86 323.9 226 70.8
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 1.9e-86 323.2 278 61.5
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 4.7e-85 318.5 251 67.3
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 2.3e-84 316.2 268 62.3
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 3.1e-84 315.8 225 72.0
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 1.2e-83 313.9 252 64.3
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 2.9e-82 309.3 264 62.9
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-81 307.0 255 62.0
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.2e-80 303.9 241 62.2
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.6e-80 303.5 251 62.2
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 3.9e-79 298.9 210 71.0
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 1.1e-78 297.4 277 58.5
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 4.3e-78 295.4 254 60.2
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 1.5e-75 287.0 252 60.3
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 3.4e-75 285.8 269 59.1
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 4.1e-73 278.9 252 59.5
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 6.0e-72 275.0 224 67.0
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.4e-68 263.8 234 58.1
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.8e-60 236.9 178 64.0
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 6.9e-52 208.4 239 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 2.0e-51 206.8 269 43.9
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 2.6e-51 206.5 167 63.5
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 9.9e-51 204.5 238 47.1
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.9e-49 200.3 250 44.4
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 5.4e-49 198.7 171 62.0
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 9.9e-43 177.9 167 58.1
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.4e-41 174.1 159 61.0
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 8.7e-39 164.9 266 37.6
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 4.8e-37 159.1 258 39.1
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 1.5e-35 154.1 104 71.2
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 1.9e-33 147.1 234 41.9
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.3e-33 144.8 108 63.9
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 2.7e-32 143.3 248 35.9
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.6e-29 134.0 151 51.7
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.9e-26 123.2 120 58.3
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.7e-13 79.7 63 61.9
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 3.4e-11 73.2 246 24.8
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 7.7e-11 72.0 115 33.0
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.0e-10 71.6 216 24.5
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.0e-10 71.6 214 24.3
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 1.7e-10 70.9 115 32.2
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 2.9e-10 70.1 214 25.2
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.4e-09 67.8 101 33.7
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.4e-09 67.8 101 33.7
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.9e-09 67.4 101 32.7
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 4.2e-09 66.2 223 22.9
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 4.2e-09 66.2 101 31.7
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 7.2e-09 65.5 116 31.9
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 7.2e-09 65.5 116 31.9
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.2e-08 64.7 116 31.9
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.2e-08 64.7 116 31.9
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.6e-08 64.3 115 30.4
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.1e-08 63.9 116 31.0
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 3.6e-08 63.2 116 30.2
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 6.1e-08 62.4 116 29.3
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 2.6e-06 57.0 117 28.2


User provided reference genes

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