Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 5.6e-167 590.9 303 100.0
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.7e-110 403.3 215 96.3
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 2.0e-76 290.0 214 72.0
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 3.9e-75 285.8 212 69.8
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 2.5e-74 283.1 206 72.8
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 4.9e-70 268.9 214 65.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.4e-69 267.3 217 63.1
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 3.2e-69 266.2 218 65.6
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.6e-68 263.8 209 66.5
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.3e-67 260.8 210 63.3
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.7e-67 260.4 214 64.5
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.7e-67 260.4 212 65.1
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 6.6e-67 258.5 211 64.9
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 1.9e-66 256.9 210 61.4
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 3.3e-66 256.1 207 63.8
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 5.6e-66 255.4 214 63.6
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 7.3e-66 255.0 208 63.9
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 9.5e-66 254.6 214 64.0
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 2.8e-65 253.1 209 63.6
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.8e-65 253.1 215 62.8
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 4.7e-65 252.3 212 64.6
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 2.4e-64 250.0 211 61.6
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.2e-63 247.7 211 63.0
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 2.0e-63 246.9 207 60.9
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 2.0e-63 246.9 207 60.9
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 3.4e-63 246.1 210 61.9
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.3e-62 244.2 209 64.1
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.2e-62 243.4 204 61.8
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 4.9e-62 242.3 209 63.6
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 4.9e-62 242.3 218 61.5
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 1.9e-61 240.4 209 58.4
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.9e-61 240.4 206 61.2
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.9e-61 240.4 206 61.2
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 4.1e-61 239.2 232 54.7
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 5.4e-61 238.8 213 59.2
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 7.1e-61 238.4 208 59.6
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 7.1e-61 238.4 219 60.7
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 2.1e-60 236.9 210 61.4
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 2.7e-60 236.5 210 62.9
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.5e-60 236.1 209 59.3
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 6.0e-60 235.3 206 58.7
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 6.0e-60 235.3 209 59.3
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 7.8e-60 235.0 217 59.9
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.0e-59 234.6 209 58.9
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.3e-59 234.2 209 58.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 2.3e-59 233.4 209 58.9
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 6.6e-59 231.9 207 61.8
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 8.7e-59 231.5 213 59.6
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.9e-58 230.3 205 57.6
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.5e-58 229.9 209 56.9
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 3.3e-58 229.6 200 61.0
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 3.3e-58 229.6 212 58.5
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.2e-57 227.6 208 58.7
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 1.2e-57 227.6 208 59.1
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 2.8e-57 226.5 196 64.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.8e-57 226.5 201 58.7
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 8.1e-57 224.9 212 57.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 6.9e-56 221.9 208 57.7
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.6e-55 219.9 208 57.2
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 2.6e-55 219.9 215 54.9
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 4.4e-55 219.2 206 56.8
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 2.4e-53 213.4 206 53.9
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.2e-53 213.0 209 52.2
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 2.1e-52 210.3 204 52.9
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 2.1e-52 210.3 211 55.5
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 3.5e-52 209.5 217 54.8
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 3.3e-50 203.0 205 53.7
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 3.3e-50 203.0 200 56.5
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 5.6e-50 202.2 198 53.5
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 5.6e-50 202.2 205 54.6
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 7.3e-50 201.8 208 51.4
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 7.3e-50 201.8 207 53.6
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 9.6e-50 201.4 205 53.7
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.6e-49 200.7 208 51.4
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 2.8e-49 199.9 208 51.4
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 4.8e-49 199.1 208 51.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 6.2e-49 198.7 203 54.2
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.8e-48 197.2 259 46.7
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 6.9e-48 195.3 205 54.6
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 9.0e-48 194.9 201 52.7
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 1.2e-47 194.5 214 47.7
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 4.5e-47 192.6 160 64.4
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 4.5e-47 192.6 189 51.9
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 8.4e-46 188.3 184 52.2
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 5.4e-45 185.7 250 48.0
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.6e-44 184.1 166 56.6
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 8.7e-43 178.3 205 48.8
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 3.4e-39 166.4 188 48.4
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 3.4e-39 166.4 198 47.0
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 9.9e-39 164.9 204 45.6
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 6.7e-35 152.1 203 43.3
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 7.4e-34 148.7 148 55.4
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 3.7e-33 146.4 168 50.0
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 3.1e-32 143.3 202 43.1
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.9e-30 136.7 127 55.9
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 4.9e-30 136.0 156 46.2
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 6.5e-30 135.6 168 49.4
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 1.1e-26 124.8 182 42.9
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.3e-26 123.2 197 41.6
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 7.4e-26 122.1 133 51.1
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 8.2e-25 118.6 159 44.0
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 4.1e-24 116.3 131 50.4
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 9.4e-21 105.1 195 34.4
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.0e-19 100.1 170 38.8
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 8.5e-14 82.0 94 45.7
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 9.4e-13 78.6 46 84.8
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.4e-11 74.7 85 48.2
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 7.0e-08 62.4 56 55.4
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 2.6e-07 60.5 56 55.4
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 6.5e-06 55.8 228 29.4


User provided reference genes

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